Illinois Data Bank

AllanLab fluidigm pipeline test dataset

Cite this dataset:
Allan, Brian; Fredericks, Lisa (2020): AllanLab fluidigm pipeline test dataset. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-0095812_V1

Dataset Description

The Allan Lab has published a Fluidigm pipeline online. This is the url: https://github.com/HPCBio/allan-fluidigm-pipeline.
This url includes a tutorial for running the pipeline. However it does not have test datasets yet.
This tarball hosted at the Illinois Data Bank is the dataset that completes the github tutorial.
It includes inputs (custom database of tick pathogens and fluidigm raw reads) and output files (tables of samples with taxonomic classifications).

Subject

Life Sciences

Keywords

 custom database of tick pathogens; fluidigm pipeline; fluidigm paired reads; fluidigm tutorial

License

 CC0

Funder

 U.S. National Institutes of Health (NIH)-Grant:484372-361000-291100

Corresponding Creator

 Brian Allan

Downloaded

 972 times
Version DOI Comment Publication Date
1 10.13012/B2IDB-0095812_V1 2020-08-25

Open in Globus what's this?
167 MB File
23.5 MB File
197 MB File
802 MB File
11.7 KB File
4.54 GB File
517 KB File
199 KB File

Contact the Research Data Service for help interpreting this log.

RelatedMaterial destroy: {"material_type"=>"Code", "availability"=>nil, "link"=>"https://github.com/HPCBio/allan-fluidigm-pipeline", "uri"=>"", "uri_type"=>"", "citation"=>"", "dataset_id"=>874, "selected_type"=>"Code", "datacite_list"=>"", "note"=>nil, "feature"=>nil} 2025-01-08T23:48:39Z
Dataset update: {"subject"=>["", "Life Sciences"]} 2020-11-02T18:03:15Z
Research Data Service Illinois Data Bank
Access and Use Policies Web Privacy Notice Contact Us