Illinois Data Bank - Dataset

AllanLab fluidigm pipeline test dataset
Cite this dataset:
Allan, Brian; Fredericks, Lisa (2020): AllanLab fluidigm pipeline test dataset. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-0095812_V1
Dataset Description

The Allan Lab has published a Fluidigm pipeline online. This is the url: https://github.com/HPCBio/allan-fluidigm-pipeline.
This url includes a tutorial for running the pipeline. However it does not have test datasets yet.
This tarball hosted at the Illinois Data Bank is the dataset that completes the github tutorial.
It includes inputs (custom database of tick pathogens and fluidigm raw reads) and output files (tables of samples with taxonomic classifications).
Subject Life Sciences
Keywords custom database of tick pathogens; fluidigm pipeline; fluidigm paired reads; fluidigm tutorial
License CC0
Funder U.S. National Institutes of Health (NIH)-Grant:484372-361000-291100
Corresponding Creator Brian Allan
Downloaded 481 times
Version DOI Comment Publication Date
1 10.13012/B2IDB-0095812_V1 2020-08-25

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RelatedMaterial destroy: {"material_type"=>"Code", "availability"=>nil, "link"=>"https://github.com/HPCBio/allan-fluidigm-pipeline", "uri"=>"", "uri_type"=>"", "citation"=>"", "dataset_id"=>874, "selected_type"=>"Code", "datacite_list"=>"", "note"=>nil, "feature"=>nil} 2025-01-08T23:48:39Z
Dataset update: {"subject"=>["", "Life Sciences"]} 2020-11-02T18:03:15Z