AllanLab fluidigm pipeline test dataset

Name: AllanLab fluidigm pipeline test dataset
License: https://creativecommons.org/publicdomain/zero/1.0/
Keywords: custom database of tick pathogens, fluidigm pipeline, fluidigm paired reads, fluidigm tutorial

Allan, Brian; Fredericks, Lisa

doi:10.13012/B2IDB-0095812_V1

Illinois Data Bank - Dataset

AllanLab fluidigm pipeline test dataset

Cite this dataset:

Allan, Brian; Fredericks, Lisa (2020): AllanLab fluidigm pipeline test dataset. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-0095812_V1

Use this persistent URL to link to this dataset:


Dataset Description	The Allan Lab has published a Fluidigm pipeline online. This is the url: https://github.com/HPCBio/allan-fluidigm-pipeline. This url includes a tutorial for running the pipeline. However it does not have test datasets yet. This tarball hosted at the Illinois Data Bank is the dataset that completes the github tutorial. It includes inputs (custom database of tick pathogens and fluidigm raw reads) and output files (tables of samples with taxonomic classifications).
Subject	Life Sciences
Keywords	custom database of tick pathogens; fluidigm pipeline; fluidigm paired reads; fluidigm tutorial
License	CC0
Funder	U.S. National Institutes of Health (NIH)-Grant:484372-361000-291100
Corresponding Creator	Brian Allan
Downloaded	438 times

Versions

Version	DOI	Comment	Publication Date
1	10.13012/B2IDB-0095812_V1		2020-08-25

Files


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BT18SF_BT18SR.tar.gz 167 MB File
FBLBM16-23F3_FBLBM1623R3.tar.gz 23.5 MB File
FBbslF_FBbslR2.tar.gz 197 MB File
FRICK23_5F1_FRICK23_5R4.tar.gz 802 MB File
SeedSeqs.fasta.tar.gz 11.7 KB File
V4_515F_New_V4_806R_New.tar.gz 4.54 GB File
database.tar.gz 517 KB File
results.tar.gz 199 KB File

Change Log

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Dataset	update: {"subject"=>["", "Life Sciences"]}	2020-11-02T18:03:15Z