Illinois Data Bank - Dataset

Miscanthus sinensis multi-location trial: phenotypic analysis, genome-wide association, and genomic prediction
Cite this dataset:
Clark, Lindsay V.; Dwiyanti, Maria Stefanie; Anzoua, Kossonou G.; Brummer, Joe E.; Ghimire, Bimal Kumar; Głowacka, Katarzyna; Hall, Megan; Heo, Kweon; Jin, Xiaoli; Lipka, Alexander E.; Peng, Junhua; Yamada, Toshihiko; Yoo, Ji Hye; Yu, Chang Yeon; Zhao, Hua; Long, Stephen P.; Sacks, Erik J. (2019): Miscanthus sinensis multi-location trial: phenotypic analysis, genome-wide association, and genomic prediction . University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-0790815_V3
Dataset Description

This dataset contains genotypic and phenotypic data, R scripts, and the results of analysis pertaining to a multi-location field trial of Miscanthus sinensis. Genome-wide association and genomic prediction were performed for biomass yield and 14 yield-component traits across six field trial locations in Asia and North America, using 46,177 single-nucleotide polymorphism (SNP) markers mined from restriction site-associated DNA sequencing (RAD-seq) and 568 M. sinensis accessions. Genomic regions and candidate genes were identified that can be used for breeding improved varieties of M. sinensis, which in turn will be used to generate new M. xgiganteus clones for biomass.
Subject Life Sciences
Keywords miscanthus; genotyping-by-sequencing (GBS); genome-wide association studies (GWAS); genomic selection
License CC BY
Funder U.S. Department of Energy (DOE)-Grant:DE-SC0006634
Funder U.S. Department of Energy (DOE)-Grant:DE-SC0018420
Corresponding Creator Erik J. Sacks
Downloaded 5336 times
Version DOI Comment Publication Date
3 10.13012/B2IDB-0790815_V3 One R script was updated and an another was added in response to peer review 2019-03-25
2 10.13012/B2IDB-0790815_V2 Updated files from v1 2018-12-19

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RelatedMaterial update: {"material_type"=>["Dataset", "Article"], "selected_type"=>["Dataset", "Article"]} 2019-04-16T16:59:49Z
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RelatedMaterial update: {"datacite_list"=>["", "IsSupplementTo"]} 2019-03-26T15:51:33Z
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RelatedMaterial update: {"datacite_list"=>["", "IsSupplementedBy"]} 2019-03-26T15:51:33Z
RelatedMaterial update: {"datacite_list"=>["", "IsSupplementedBy"]} 2019-03-26T15:51:33Z
RelatedMaterial update: {"datacite_list"=>["", "IsSupplementedBy"]} 2019-03-26T15:51:33Z