Miscanthus sinensis multi-location trial: phenotypic analysis, genome-wide association, and genomic prediction
Citation:
Clark, Lindsay V.; Dwiyanti, Maria Stefanie; Anzoua, Kossonou G.; Brummer, Joe E.; Ghimire, Bimal Kumar; Głowacka, Katarzyna; Hall, Megan; Heo, Kweon; Jin, Xiaoli; Lipka, Alexander E.; Peng, Junhua; Yamada, Toshihiko; Yoo, Ji Hye; Yu, Chang Yeon; Zhao, Hua; Long, Stephen P.; Sacks, Erik J. (2019): Miscanthus sinensis multi-location trial: phenotypic analysis, genome-wide association, and genomic prediction . University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-0790815_V3
Persistent link for this dataset:
Related Dataset Fick, S.E. and R.J. Hijmans, 2017. Worldclim 2: New 1-km spatial resolution climate surfaces for global land areas. International Journal of Climatology.
Related Article Clark, L. V., Dwiyanti, M. S., Anzoua, K. G., Brummer, J. E., Ghimire, B. K., Głowacka, K. , Hall, M. , Heo, K. , Jin, X. , Lipka, A. E., Peng, J. , Yamada, T. , Yoo, J. H., Yu, C. Y., Zhao, H. , Long, S. P. and Sacks, E. J. (2019), Biomass yield in a genetically diverse Miscanthus sinensis germplasm panel evaluated at five locations revealed individuals with exceptional potential. GCB Bioenergy. Accepted Author Manuscript. doi:10.1111/gcbb.12606
Related Dataset Genetic diversity of Miscanthus sinensis. NCBI Sequence Read Archive, Bioproject PRJNA207721
Related Code Lindsay Clark. R functions for conversion of genetic data formats.
Related Dataset Data from: A footprint of past climate change on the diversity and population structure of Miscanthus sinensis
Related Article Clark, L. V., Dwiyanti, M. S., Anzoua, K. G., Brummer, J. E., Ghimire, B. K., Głowacka, K. , Hall, M. , Heo, K. , Jin, X. , Lipka, A. E., Peng, J. , Yamada, T. , Yoo, J. H., Yu, C. Y., Zhao, H. , Long, S. P. and Sacks, E. J. (2019), Genome‐wide association and genomic prediction for biomass yield in a genetically diverse Miscanthus sinensis germplasm panel phenotyped at five locations in Asia and North America. GCB Bioenergy. Accepted Author Manuscript. doi:10.1111/gcbb.12620
Dataset Description

This dataset contains genotypic and phenotypic data, R scripts, and the results of analysis pertaining to a multi-location field trial of Miscanthus sinensis. Genome-wide association and genomic prediction were performed for biomass yield and 14 yield-component traits across six field trial locations in Asia and North America, using 46,177 single-nucleotide polymorphism (SNP) markers mined from restriction site-associated DNA sequencing (RAD-seq) and 568 M. sinensis accessions. Genomic regions and candidate genes were identified that can be used for breeding improved varieties of M. sinensis, which in turn will be used to generate new M. xgiganteus clones for biomass.
Subject Life Sciences
Keywords miscanthus; genotyping-by-sequencing (GBS); genome-wide association studies (GWAS); genomic selection
License CC BY
Funder U.S. Department of Energy (DOE) - Grant: DE-SC0006634
Funder U.S. Department of Energy (DOE) - Grant: DE-SC0018420
Corresponding Creator Erik J. Sacks
Downloaded 4485 times
Version DOI Comment Publication Date
3 10.13012/B2IDB-0790815_V3 One R script was updated and an another was added in response to peer review 2019-03-25
2 10.13012/B2IDB-0790815_V2 Updated files from v1 2018-12-19
1 10.13012/B2IDB-0790815_V1 2017-11-29
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