RAD-seq genotypes for a Miscanthus sinensis diversity panel
Citation:
Clark, Lindsay V.; Dwiyanti, Maria Stefanie; Anzoua, Kossonou G.; Brummer, Joe E.; Glowacka, Katarzyna; Hall, Megan; Heo, Kweon; Jin, Xiaoli; Lipka, Alexander E.; Peng, Junhua; Yamada, Toshihiko; Yoo, Ji Hye; Yu, Chang Yeon; Zhao, Hua; Long, Stephen P.; Sacks, Erik J. (2019): RAD-seq genotypes for a Miscanthus sinensis diversity panel. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-1402948_V1
Persistent link for this dataset:
Related Dataset Genetic Diversity of Miscanthus sinensis. Raw DNA sequencing data available at NCBI Sequence Read Archive, accession SRP026347.
Related Dataset Clark, Lindsay V.; Dwiyanti, Maria S.; Anzoua, Kossonou G.; Brummer, Joe E.; Głowacka, Katarzyna; Hall, Megan; Heo, Kweon; Jin, Xiaoli; Lipka, Alexander E.; Peng, Junhua; Yamada, Toshihiko; Yoo, Ji Hye; Yu, Chang Yeon; Zhao, Hua; Long, Stephen P.; Sacks, Erik J. (2017): Data from: Genome-wide association and genomic prediction for biomass yield in Miscanthus sinensis phenotyped in Asia and North America. University of Illinois at Urbana-Champaign.
Related Dataset Clark LV, Brummer JE, Głowacka K, Hall MC, Heo K, Peng J, Yamada T, Yoo JH, Yu CY, Zhao H, Long SP, and Sacks EJ (2014) Data from: A footprint of past climate change on the diversity and population structure of Miscanthus sinensis. University of Illinois at Urbana-Champaign
Dataset Description

Genotype calls are provided for a collection of 583 Miscanthus sinensis clones across 1,108,836 loci mapped to version 7 of the Miscanthus sinensis reference genome. Sequence and alignment information for all unique RAD tags is also provided to facilitate cross-referencing to other genomes.
Subject Life Sciences
Keywords variant call format (VCF); sequence alignment/map format (SAM); miscanthus; single nucleotide polymorphism (SNP); restriction site-associated DNA sequencing (RAD-seq); bioenergy; grass
License CC BY
Funder U.S. Department of Energy (DOE) - Grant: DE-SC0006634
Corresponding Creator Erik J. Sacks
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1 10.13012/B2IDB-1402948_V1 2019-07-27
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update: {"publication_state"=>["file embargo", "released"]} 2019-07-27T06:00:09Z