Illinois Data Bank - Dataset

RAD-seq genotypes for a Miscanthus sinensis diversity panel
Cite this dataset:
Clark, Lindsay V.; Dwiyanti, Maria Stefanie; Anzoua, Kossonou G.; Brummer, Joe E.; Glowacka, Katarzyna; Hall, Megan; Heo, Kweon; Jin, Xiaoli; Lipka, Alexander E.; Peng, Junhua; Yamada, Toshihiko; Yoo, Ji Hye; Yu, Chang Yeon; Zhao, Hua; Long, Stephen P.; Sacks, Erik J. (2019): RAD-seq genotypes for a Miscanthus sinensis diversity panel. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-1402948_V1
Dataset Description

Genotype calls are provided for a collection of 583 Miscanthus sinensis clones across 1,108,836 loci mapped to version 7 of the Miscanthus sinensis reference genome. Sequence and alignment information for all unique RAD tags is also provided to facilitate cross-referencing to other genomes.
Subject Life Sciences
Keywords variant call format (VCF); sequence alignment/map format (SAM); miscanthus; single nucleotide polymorphism (SNP); restriction site-associated DNA sequencing (RAD-seq); bioenergy; grass
License CC BY
Funder U.S. Department of Energy (DOE)-Grant:DE-SC0006634
Corresponding Creator Erik J. Sacks
Downloaded 867 times
Version DOI Comment Publication Date
1 10.13012/B2IDB-1402948_V1 2019-07-27

3.03 KB File
558 MB File
7.39 GB File
2.06 GB File
11 GB File
17.6 KB File

Contact the Research Data Service for help interpreting this log.

RelatedMaterial update: {"uri"=>["", "hdl.handle.net/2142/49963"], "uri_type"=>["", "Handle"], "datacite_list"=>["", "IsSupplementedBy"]} 2019-07-30T14:47:24Z
RelatedMaterial update: {"uri"=>["", "10.13012/B2IDB-0790815_V1"], "uri_type"=>["", "DOI"], "datacite_list"=>["", "IsSupplementedBy"]} 2019-07-30T14:47:24Z
RelatedMaterial update: {"uri"=>["", "https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?study=SRP026347"], "uri_type"=>["", "URL"], "datacite_list"=>["", "IsSupplementedBy"]} 2019-07-30T14:47:24Z
Dataset update: {"publication_state"=>["file embargo", "released"]} 2019-07-27T06:00:09Z