RAD-seq genotypes for a Miscanthus sinensis diversity panel
Citation:
Clark, Lindsay V.; Dwiyanti, Maria Stefanie; Anzoua, Kossonou G.; Brummer, Joe E.; Glowacka, Katarzyna; Hall, Megan; Heo, Kweon; Jin, Xiaoli; Lipka, Alexander E.; Peng, Junhua; Yamada, Toshihiko; Yoo, Ji Hye; Yu, Chang Yeon; Zhao, Hua; Long, Stephen P.; Sacks, Erik J. (2019): RAD-seq genotypes for a Miscanthus sinensis diversity panel. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-1402948_V1
If you use this dataset, please cite it.
Related Dataset Genetic Diversity of Miscanthus sinensis. Raw DNA sequencing data available at NCBI Sequence Read Archive, accession SRP026347.
Related Dataset Clark, Lindsay V.; Dwiyanti, Maria S.; Anzoua, Kossonou G.; Brummer, Joe E.; Głowacka, Katarzyna; Hall, Megan; Heo, Kweon; Jin, Xiaoli; Lipka, Alexander E.; Peng, Junhua; Yamada, Toshihiko; Yoo, Ji Hye; Yu, Chang Yeon; Zhao, Hua; Long, Stephen P.; Sacks, Erik J. (2017): Data from: Genome-wide association and genomic prediction for biomass yield in Miscanthus sinensis phenotyped in Asia and North America. University of Illinois at Urbana-Champaign.
Related Dataset Clark LV, Brummer JE, Głowacka K, Hall MC, Heo K, Peng J, Yamada T, Yoo JH, Yu CY, Zhao H, Long SP, and Sacks EJ (2014) Data from: A footprint of past climate change on the diversity and population structure of Miscanthus sinensis. University of Illinois at Urbana-Champaign
Dataset Description

Genotype calls are provided for a collection of 583 Miscanthus sinensis clones across 1,108,836 loci mapped to version 7 of the Miscanthus sinensis reference genome. Sequence and alignment information for all unique RAD tags is also provided to facilitate cross-referencing to other genomes.
Subject Life Sciences
Keywords variant call format (VCF); sequence alignment/map format (SAM); miscanthus; single nucleotide polymorphism (SNP); restriction site-associated DNA sequencing (RAD-seq); bioenergy; grass
License CC BY
Funder U.S. Department of Energy (DOE) - Grant: DE-SC0006634
Corresponding Creator Erik J. Sacks
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1 10.13012/B2IDB-1402948_V1 2019-07-27
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update: {"publication_state"=>["file embargo", "released"]} 2019-07-27T06:00:09Z