Data from: Polynomial-Time Statistical Estimation of Species Trees under Gene Duplication and Loss

Legried, Brandon; Molloy, Erin K.; Warnow, Tandy; Roch, Sebastien

doi:10.13012/B2IDB-2626814_V3

Data from: Polynomial-Time Statistical Estimation of Species Trees under Gene Duplication and Loss

Cite this dataset:

Legried, Brandon; Molloy, Erin K.; Warnow, Tandy; Roch, Sebastien (2020): Data from: Polynomial-Time Statistical Estimation of Species Trees under Gene Duplication and Loss. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-2626814_V3

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Metadata


Dataset Description	This repository includes scripts and datasets for the paper, "Polynomial-Time Statistical Estimation of Species Trees under Gene Duplication and Loss."
Subject	Life Sciences
Keywords	Species tree estimation; gene duplication and loss; identifiability; statistical consistency; quartets; ASTRAL
License	CC0
Funder	U.S. National Science Foundation (NSF)-Grant:0725070
Funder	U.S. National Science Foundation (NSF)-Grant:1238993
Funder	Ira and Debra Cohen Graduate Fellowship in Computer Science
Corresponding Creator	Erin K. Molloy
Downloaded	1678 times
Related Materials (2) Preprint Legried, B., Molloy, E.K., Warnow, T., and Roch, S. (2019) Polynomial-Time Statistical Estimation of Species Trees under Gene Duplication and Loss. bioRxiv 821439. https://doi.org/10.1101/821439 Article Legried B., Molloy, E.K., Warnow, T., Roch, S. (2020) Polynomial-Time Statistical Estimation of Species Trees Under Gene Duplication and Loss. In: Schwartz R. (eds) Research in Computational Molecular Biology. RECOMB 2020. Lecture Notes in Computer Science, vol 12074. Springer, Cham. https://doi.org/10.1007/978-3-030-45257-5_8

Versions in Illinois Data Bank

Version	DOI	Comment	Publication Date
3	10.13012/B2IDB-2626814_V3	This version includes additional analysis and discussion regarding one of the parameters used in the simulation study (see revised-appendix-b.pdf for details).	2020-07-15
2	10.13012/B2IDB-2626814_V2	This version includes fixed version of ASTRID (for multi-allele datasets) and fixed results (.csv) which was made in January, 2020 as part of bug fixing.	2020-01-22
1	10.13012/B2IDB-2626814_V1		2019-11-11