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| Version | DOI | Comment | Publication Date |
|---|---|---|---|
| 3 | 10.13012/B2IDB-1475719_V3 | files added and updated to include more input files of analyses, related scripts, and the main outputs | 2024-09-17 |
| 2 | 10.13012/B2IDB-1475719_V2 | We updated our data matrices by excluding two samples and adding one new sample. | 2024-08-16 |
| 1 | 10.13012/B2IDB-1475719_V1 | 2025-01-01 |
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| RelatedMaterial | create: {"material_type"=>"Dataset", "availability"=>nil, "link"=>"https://doi.org/10.13012/B2IDB-1475719_V3", "uri"=>"10.13012/B2IDB-1475719_V3", "uri_type"=>"DOI", "citation"=>" (2024): Datasets for \"Phylogeny, Biogeography and Morphological Evolution of the Treehopper-Like Leafhoppers (Hemiptera: Cicadellidae) Megophthalminae and Ulopinae\". University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-1475719_V3", "dataset_id"=>2767, "selected_type"=>"Dataset", "datacite_list"=>"IsPreviousVersionOf", "note"=>nil, "feature"=>nil} | 2024-09-12T11:48:35Z |
| Dataset | update: {"publication_state"=>["version candidate under curator review", "released"], "release_date"=>[nil, Fri, 16 Aug 2024]} | 2024-08-16T01:04:38Z |
| Dataset | update: {"title"=>["Datasets for \"Phylogeny, Biogeography and Morphological Evolution of the Treehopper-Like Leafhoppers (Hemiptera: Cicadellidae) with Redefinition of Cicadellidae and Revised Status for Megophthalmidae and Ulopidae\"", "Datasets for \"Phylogeny, Biogeography and Morphological Evolution of the Treehopper-Like Leafhoppers (Hemiptera: Cicadellidae) Megophthalminae and Ulopinae\""], "description"=>["The following files were used to reconstruct the phylogeny of the Megophthalmidae and Ulopidae. \r\nTaxon_sampling.csv: contains the sample IDs (1st column) which were used in the alignments and the taxonomic information (2nd to 6th columns).\r\nconcatenated_aa_partition.nex: the partitioning schemes for the maximum likelihood analysis using concatenated_aa.phy. This file partitions the 52,474 amino acid positions into 427 character sets.\r\nconcatenated_aa_.phy: a concatenated amino acid dataset with 52,474 amino acid positions. This dataset was used for the maximum likelihood analysis by IQ-TREE v1.6.12. Hyphens are used to represent gaps. \r\nconcatenated_nt_partition.nex: the partitioning schemes for the maximum likelihood analysis using concatenated_nt.phy. This file partitions the 158,364 nucleotide positions into 427 character sets.\r\nconcatenated_nt_.phy: a concatenated nucleotide dataset with 158,364 nucleotide positions. This dataset was used for the maximum likelihood analysis by IQ-TREE v1.6.12. Hyphens are used to represent gaps. \r\nIndividual_gene_alignment.zip: contains 427 FASTA files, each one represents the nucleotide alignment for a gene. Hyphens are used to represent gaps. These files were used to construct gene trees using IQ-TREE v1.6.12, followed by multispecies coalescent analysis using ASTRAL v 4.10.5 based the consensus trees with a minimum average bootstrap value of 70.\r\n", "The following 6 files were used to reconstruct the phylogeny of the Megophthalminae and Ulopinae.\r\n1. Taxon_sampling.csv: contains the sample IDs (1st column) which were used in the alignments and the taxonomic information (2nd to 6th columns).\r\n2. concatenated_aa_partition.nex: the partitioning schemes for the maximum likelihood analysis using concatenated_aa.phy. This file partitions the 52,024 amino acid positions into 427 character sets.\r\n3. concatenated_aa_.phy: a concatenated amino acid dataset with 52,024 amino acid positions. This dataset was used for the maximum likelihood analysis by IQ-TREE v1.6.12. Hyphens are used to represent gaps.\r\n4. concatenated_nt_partition.nex: the partitioning schemes for the maximum likelihood analysis using concatenated_nt.phy. This file partitions the 156,072 nucleotide positions into 427 character sets.\r\n5. concatenated_nt_.phy: a concatenated nucleotide dataset with 156,072 nucleotide positions. This dataset was used for the maximum likelihood analysis by IQ-TREE v1.6.12. Hyphens are used to represent gaps.\r\n6. Individual_gene_alignment.zip: contains 427 FASTA files, each one represents the nucleotide alignment for a gene. Hyphens are used to represent gaps. These files were used to construct gene trees using IQ-TREE v1.6.12, followed by multispecies coalescent analysis using ASTRAL v 4.10.5 based the maximum likelihood trees with the average SH-aLRT and ultrafast bootstrap values of ≥ 70.\r\n\r\n"]} | 2024-08-15T01:08:34Z |
| Dataset | update: {"hold_state"=>["version candidate under curator review", "none"]} | 2024-08-14T14:51:59Z |
| Dataset | update: {"version_comment"=>[nil, "We updated our data matrices by excluding two samples and adding one new sample."]} | 2024-08-14T01:17:15Z |
| RelatedMaterial | create: {"material_type"=>"Dataset", "availability"=>nil, "link"=>"https://doi.org/10.13012/B2IDB-1475719_V1", "uri"=>"10.13012/B2IDB-1475719_V1", "uri_type"=>"DOI", "citation"=>"Cao, Yanghui; Dietrich, Christopher H.; Dmitriev, Dmitry A.; Kits, Joel H.; Xue, Qingquan; Zhang, Yalin (2025): Datasets for \"Phylogeny, Biogeography and Morphological Evolution of the Treehopper-Like Leafhoppers (Hemiptera: Cicadellidae) with Redefinition of Cicadellidae and Revised Status for Megophthalmidae and Ulopidae\". University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-1475719_V1", "dataset_id"=>2767, "selected_type"=>"Dataset", "datacite_list"=>"IsNewVersionOf", "note"=>nil, "feature"=>nil} | 2024-08-14T01:16:00Z |
| RelatedMaterial | create: {"material_type"=>"Dataset", "availability"=>nil, "link"=>"https://doi.org/10.13012/B2IDB-8842653_V2", "uri"=>"", "uri_type"=>"", "citation"=>"Cao, Y., Dietrich, C.H., Zahniser, J.N. & Dmitriev, D.A. (2022) Dense sampling of taxa and characters improves phylogenetic resolution among deltocephaline leafhoppers (Hemiptera: Cicadellidae: Deltocephalinae). Systematic Entomology, 47: 430–444.", "dataset_id"=>2767, "selected_type"=>"Dataset", "datacite_list"=>"", "note"=>"", "feature"=>nil} | 2024-08-14T01:16:00Z |
| RelatedMaterial | create: {"material_type"=>"Dataset", "availability"=>nil, "link"=>"https://doi.org/10.13012/B2IDB-8636195_V1", "uri"=>"", "uri_type"=>"", "citation"=>"Cao, Y., Dietrich, C.H., Kits, J.H., Dmitriev, D.A., Richter, R., Eyres, J., Dettman, J.R., Xu, Y. & Huang, M. (2023). Phylogenomics of microleafhoppers (Hemiptera: Cicadellidae: Typhlocybinae): morphological evolution, divergence times and biogeography. Insect Systematics and Diversity, 7(4): 1–19.", "dataset_id"=>2767, "selected_type"=>"Dataset", "datacite_list"=>"", "note"=>"", "feature"=>nil} | 2024-08-14T01:16:00Z |
| Funder | create: {"name"=>"Agriculture and Agri- Food Canada", "identifier"=>"", "identifier_scheme"=>"", "grant"=>"J-001564, J-002279", "dataset_id"=>2767, "code"=>"other"} | 2024-08-14T01:15:59Z |
| Funder | create: {"name"=>"National Natural Science Foundation of China", "identifier"=>"", "identifier_scheme"=>"", "grant"=>"32370493, 32370495, 32170472", "dataset_id"=>2767, "code"=>"other"} | 2024-08-14T01:15:59Z |
| Funder | create: {"name"=>"U.S. National Science Foundation (NSF)", "identifier"=>"10.13039/100000001", "identifier_scheme"=>"DOI", "grant"=>"DEB-1639601", "dataset_id"=>2767, "code"=>"NSF"} | 2024-08-14T01:15:59Z |
| Creator | create: {"family_name"=>"Zhang", "given_name"=>"Yalin", "identifier"=>"", "email"=>"yalinzh@nwsuaf.edu.cn", "is_contact"=>false, "row_position"=>6} | 2024-08-14T01:15:59Z |
| Creator | create: {"family_name"=>"Xue", "given_name"=>"Qingquan", "identifier"=>"", "email"=>"xueqingquan_123@nwsuaf.edu.cn", "is_contact"=>false, "row_position"=>5} | 2024-08-14T01:15:59Z |
| Creator | create: {"family_name"=>"Kits", "given_name"=>"Joel H.", "identifier"=>"", "email"=>"joel.kits@AGR.GC.CA", "is_contact"=>false, "row_position"=>4} | 2024-08-14T01:15:59Z |
| Creator | create: {"family_name"=>"Dmitriev", "given_name"=>"Dmitry A.", "identifier"=>"", "email"=>"arboridia@gmail.com", "is_contact"=>false, "row_position"=>3} | 2024-08-14T01:15:59Z |
| Creator | create: {"family_name"=>"Dietrich", "given_name"=>"Christopher H.", "identifier"=>"", "email"=>"chdietri@illinois.edu", "is_contact"=>false, "row_position"=>2} | 2024-08-14T01:15:59Z |
| Creator | create: {"family_name"=>"Cao", "given_name"=>"Yanghui", "identifier"=>"", "email"=>"caoyh@illinois.edu", "is_contact"=>true, "row_position"=>1} | 2024-08-14T01:15:59Z |
| Dataset | update: {"corresponding_creator_name"=>[nil, "Yanghui Cao"], "corresponding_creator_email"=>[nil, "caoyh@illinois.edu"]} | 2024-08-14T01:15:59Z |