PICAN-PI Public Data
Citation:
Nute, Michael; Yarlagadda, Karthik; Stumpf, Rebecca (2019): PICAN-PI Public Data. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-1678505_V1
Persistent link for this dataset:
Related Dataset Related IBD Animations
Related Dataset Cole, J. R., Wang, Q., Cardenas, E., Fish, J., Chai, B., Farris, R. J., Kulam-Syed-Mohideen, A. S., McGarrell, D. M., Marsh, T., Garrity, G. M., and Tiedje, J. M. (2009). The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic acids research, 37(Database issue), D141–5.
Related Code Reference Implementation used to create Graphics
Dataset Description

This dataset contains all data used in the two studies included in "PICAN-PI..." by Nute, et al, other than the original raw sequences. That includes: 1) Supplementary information for the Manuscript, including all the graphics that were created, 2) 16S Reference Alignment, Phylogeny and Taxonomic Annotation used by SEPP, and 3) Data used in the manuscript as input for the graphics generation (namely, SEPP outputs and sequence multiplicities).
Subject Life Sciences
Keywords microbiome; data visualization; graphics; phylogenetics; 16S
License CC0
Funder U.S. National Science Foundation (NSF) - Grant: AF: 1513629
Funder U.S. National Science Foundation (NSF) - Grant: BCS 0820709
Corresponding Creator Rebecca Stumpf
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Version DOI Comment Publication Date
1 10.13012/B2IDB-1678505_V1 2019-02-07
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update: {"subject"=>["", "Life Sciences"]} 2019-02-12T19:48:43Z
update: {"keywords"=>["microbiome, data visualization, graphics, phylogenetics, 16S", "microbiome; data visualization; graphics; phylogenetics; 16S"], "version_comment"=>[nil, ""], "subject"=>[nil, ""]} 2019-02-07T22:31:46Z