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update: {"subject"=>[nil, "Life Sciences"]}
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2018-02-27T20:40:11Z
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update: {"description"=>["Concatenated sequence alignment, phylogenetic analysis files, and relevant software parameter files from a cophylogenetic study of Brueelia-complex lice and their avian hosts. The sequence alignment file includes a list of character blocks for each gene alignment and the parameters used for the MrBayes phylogenetic analysis. \r\n\r\n1) Files from the MrBayes analyses: \r\na) a file with 100 random post-burnin trees (50% burnin) used in the cophylogenetic analysis\r\nb) a majority rule consensus tree\r\nc) a maximum clade credibility tree. \r\nThe tree tips are labeled with louse voucher names, and can be referenced in Supplementary Table 1 of the associated publication.\r\n\r\n2) Files related to a BEAST analysis with COI data:\r\na) the XML file used as input for the BEAST run, including model parameters, MCMC chain length, and priors\r\nb) a file with 100 random post-burnin trees (10% burnin) from the BEAST posterior distribution of trees; used in OTU analysis\r\nc) an ultrametric maximum clade credibility tree\r\n\r\n3) A maximum clade credibility tree of Brueelia-complex host species generated from a distribution of trees downloaded from https://birdtree.org/subsets/", "Concatenated sequence alignment, phylogenetic analysis files, and relevant software parameter files from a cophylogenetic study of Brueelia-complex lice and their avian hosts. The sequence alignment file includes a list of character blocks for each gene alignment and the parameters used for the MrBayes phylogenetic analysis. \r\n\r\n1) Files from the MrBayes analyses: \r\na) a file with 100 random post-burnin trees (50% burnin) used in the cophylogenetic analysis - analysisrandom100_trees_brueelia.tre\r\nb) a majority rule consensus tree - treeconsensus_tree_brueelia.tre\r\nc) a maximum clade credibility tree - mcc_tree_brueelia.tre\r\nThe tree tips are labeled with louse voucher names, and can be referenced in Supplementary Table 1 of the associated publication.\r\n\r\n2) Files related to a BEAST analysis with COI data:\r\na) the XML file used as input for the BEAST run, including model parameters, MCMC chain length, and priors - beast_parameters_coi_brueelia.xml\r\nb) a file with 100 random post-burnin trees (10% burnin) from the BEAST posterior distribution of trees; used in OTU analysis - beast_100random_trees_brueelia.tre\r\nc) an ultrametric maximum clade credibility tree - mcc_tree_beast_brueelia.tre\r\n\r\n3) A maximum clade credibility tree of Brueelia-complex host species generated from a distribution of trees downloaded from https://birdtree.org/subsets/ - mcc_tree_brueelia_hosts.tre\r\n\r\n4) Concatenated sequence alignment - concatenated_alignment_brueelia.nex"], "keywords"=>["bird lice; Brueelia-complex; multiple sequence alignment; phylogenetic tree; Bayesian phylogenetic analysis; MrBayes; BEAST", "bird lice; Brueelia-complex; passerines; multiple sequence alignment; phylogenetic tree; Bayesian phylogenetic analysis; MrBayes; BEAST"], "version_comment"=>[nil, ""]}
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2018-01-11T01:03:07Z
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