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RelatedMaterial
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update: {"uri"=>["", "https://github.com/adsweet/cophylogenetic_analyses/tree/master/Brueelia"], "uri_type"=>["", "URL"], "note"=>[nil, ""], "feature"=>[nil, false]}
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2024-02-01T18:53:13Z
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update: {"note"=>[nil, ""], "feature"=>[nil, false]}
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2024-02-01T18:53:13Z
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update: {"datacite_list"=>["", "IsSupplementedBy"]}
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2018-03-27T14:05:33Z
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update: {"link"=>["", "https://doi.org/10.1016/j.ijpara.2018.01.007"], "uri"=>["", "10.1016/j.ijpara.2018.01.007"], "uri_type"=>["", "DOI"], "citation"=>["Sweet, A.D., Bush, S.E., Gustafsson, D.R., Allen, J.M., DiBlasi, E., Skeen, H.R., Weckstein, J.D., and Johnson, K.P. Host and parasite morphology influence congruence between host and parasite phylogenies. In review.", "Sweet, A.D., Bush, S.E., Gustafsson, D.R., Allen, J.M., DiBlasi, E., Skeen, H.R., Weckstein, J.D., and Johnson, K.P. Host and parasite morphology influence congruence between host and parasite phylogenies. Int. J.\r\nParasitol. (2018), https://doi.org/10.1016/j.ijpara.2018.01.007"], "datacite_list"=>["", "IsSupplementTo"]}
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2018-03-27T14:05:33Z
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Dataset
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update: {"subject"=>[nil, "Life Sciences"]}
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2018-02-27T20:40:11Z
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update: {"uri"=>[nil, ""], "uri_type"=>[nil, ""], "datacite_list"=>[nil, ""]}
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2018-01-11T01:03:07Z
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update: {"uri"=>[nil, ""], "uri_type"=>[nil, ""], "datacite_list"=>[nil, ""]}
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2018-01-11T01:03:07Z
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Dataset
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update: {"description"=>["Concatenated sequence alignment, phylogenetic analysis files, and relevant software parameter files from a cophylogenetic study of Brueelia-complex lice and their avian hosts. The sequence alignment file includes a list of character blocks for each gene alignment and the parameters used for the MrBayes phylogenetic analysis. \r\n\r\n1) Files from the MrBayes analyses: \r\na) a file with 100 random post-burnin trees (50% burnin) used in the cophylogenetic analysis\r\nb) a majority rule consensus tree\r\nc) a maximum clade credibility tree. \r\nThe tree tips are labeled with louse voucher names, and can be referenced in Supplementary Table 1 of the associated publication.\r\n\r\n2) Files related to a BEAST analysis with COI data:\r\na) the XML file used as input for the BEAST run, including model parameters, MCMC chain length, and priors\r\nb) a file with 100 random post-burnin trees (10% burnin) from the BEAST posterior distribution of trees; used in OTU analysis\r\nc) an ultrametric maximum clade credibility tree\r\n\r\n3) A maximum clade credibility tree of Brueelia-complex host species generated from a distribution of trees downloaded from https://birdtree.org/subsets/", "Concatenated sequence alignment, phylogenetic analysis files, and relevant software parameter files from a cophylogenetic study of Brueelia-complex lice and their avian hosts. The sequence alignment file includes a list of character blocks for each gene alignment and the parameters used for the MrBayes phylogenetic analysis. \r\n\r\n1) Files from the MrBayes analyses: \r\na) a file with 100 random post-burnin trees (50% burnin) used in the cophylogenetic analysis - analysisrandom100_trees_brueelia.tre\r\nb) a majority rule consensus tree - treeconsensus_tree_brueelia.tre\r\nc) a maximum clade credibility tree - mcc_tree_brueelia.tre\r\nThe tree tips are labeled with louse voucher names, and can be referenced in Supplementary Table 1 of the associated publication.\r\n\r\n2) Files related to a BEAST analysis with COI data:\r\na) the XML file used as input for the BEAST run, including model parameters, MCMC chain length, and priors - beast_parameters_coi_brueelia.xml\r\nb) a file with 100 random post-burnin trees (10% burnin) from the BEAST posterior distribution of trees; used in OTU analysis - beast_100random_trees_brueelia.tre\r\nc) an ultrametric maximum clade credibility tree - mcc_tree_beast_brueelia.tre\r\n\r\n3) A maximum clade credibility tree of Brueelia-complex host species generated from a distribution of trees downloaded from https://birdtree.org/subsets/ - mcc_tree_brueelia_hosts.tre\r\n\r\n4) Concatenated sequence alignment - concatenated_alignment_brueelia.nex"], "keywords"=>["bird lice; Brueelia-complex; multiple sequence alignment; phylogenetic tree; Bayesian phylogenetic analysis; MrBayes; BEAST", "bird lice; Brueelia-complex; passerines; multiple sequence alignment; phylogenetic tree; Bayesian phylogenetic analysis; MrBayes; BEAST"], "version_comment"=>[nil, ""]}
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2018-01-11T01:03:07Z
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