Data for Ultra-Large Alignments Using Phylogeny-Aware Profiles
Cite this dataset:
Nguyen, Nam-phuong; Mirarab, Siavash; Kumar, Keerthana; Warnow, Tandy (2015): Data for Ultra-Large Alignments Using Phylogeny-Aware Profiles. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-3174395_V1
Use this persistent URL to link to this dataset:
Dataset Description

This dataset contains the data for PASTA and UPP.

PASTA data was used in the following articles:
Mirarab, Siavash, Nam Nguyen, Sheng Guo, Li-San Wang, Junhyong Kim, and Tandy Warnow. “PASTA: Ultra-Large Multiple Sequence Alignment for Nucleotide and Amino-Acid Sequences.” Journal of Computational Biology 22, no. 5 (2015): 377–86. doi:10.1089/cmb.2014.0156.

Mirarab, Siavash, Nam Nguyen, and Tandy Warnow. “PASTA: Ultra-Large Multiple Sequence Alignment.” Edited by Roded Sharan. Research in Computational Molecular Biology, 2014, 177–91.

UPP data was used in:
Nguyen, Nam-phuong D., Siavash Mirarab, Keerthana Kumar, and Tandy Warnow. “Ultra-Large Alignments Using Phylogeny-Aware Profiles.” Genome Biology 16, no. 1 (December 16, 2015): 124. doi:10.1186/s13059-015-0688-z.
Subject Technology and Engineering
License CC0
Funder U.S. National Science Foundation (NSF)-Grant:0733029
Funder U.S. National Science Foundation (NSF)-Grant:1461364
Funder U.S. National Science Foundation (NSF)-Grant:DBI 0733029
Funder U.S. National Science Foundation (NSF)-Grant:DBI 1265383
Funder U.S. National Science Foundation (NSF)-Grant:0331453
Funder U.S. National Institutes of Health (NIH)-Grant:T32-HG000046
Funder U.S. National Institutes of Health (NIH)-Grant:NIA U24-AG041689
Funder U.S. National Institutes of Health (NIH)-Grant:R01-GM099962
Funder Howard Hughes Medical Institute International Predoctoral Fellowship
Funder Subgrant from University of Alberta
Funder Donation from Musea Ventures
Funder Texas Advanced Computing Center
Funder iPlant Collaborative
Funder Health Research Formula Fund from the Pennsylvania Department of Health
Corresponding Creator Tandy Warnow
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Version DOI Comment Publication Date
1 10.13012/B2IDB-3174395_V1 2015-12-16
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Dataset update: {"release_date"=>[Tue, 27 Feb 2024, Wed, 16 Dec 2015]} 2024-02-29T19:53:49Z