Data for Ultra-Large Alignments Using Phylogeny-Aware Profiles

Nguyen, Nam-phuong; Mirarab, Siavash; Kumar, Keerthana; Warnow, Tandy

doi:10.13012/B2IDB-3174395_V1

Data for Ultra-Large Alignments Using Phylogeny-Aware Profiles

Cite this dataset:

Nguyen, Nam-phuong; Mirarab, Siavash; Kumar, Keerthana; Warnow, Tandy (2015): Data for Ultra-Large Alignments Using Phylogeny-Aware Profiles. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-3174395_V1

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Metadata


Dataset Description	This dataset contains the data for PASTA and UPP. PASTA data was used in the following articles: Mirarab, Siavash, Nam Nguyen, Sheng Guo, Li-San Wang, Junhyong Kim, and Tandy Warnow. “PASTA: Ultra-Large Multiple Sequence Alignment for Nucleotide and Amino-Acid Sequences.” Journal of Computational Biology 22, no. 5 (2015): 377–86. doi:10.1089/cmb.2014.0156. Mirarab, Siavash, Nam Nguyen, and Tandy Warnow. “PASTA: Ultra-Large Multiple Sequence Alignment.” Edited by Roded Sharan. Research in Computational Molecular Biology, 2014, 177–91. UPP data was used in: Nguyen, Nam-phuong D., Siavash Mirarab, Keerthana Kumar, and Tandy Warnow. “Ultra-Large Alignments Using Phylogeny-Aware Profiles.” Genome Biology 16, no. 1 (December 16, 2015): 124. doi:10.1186/s13059-015-0688-z.
Subject	Technology and Engineering
License	CC0
Funder	U.S. National Science Foundation (NSF)-Grant:0733029
Funder	U.S. National Science Foundation (NSF)-Grant:1461364
Funder	U.S. National Science Foundation (NSF)-Grant:DBI 0733029
Funder	U.S. National Science Foundation (NSF)-Grant:DBI 1265383
Funder	U.S. National Science Foundation (NSF)-Grant:0331453
Funder	U.S. National Institutes of Health (NIH)-Grant:T32-HG000046
Funder	U.S. National Institutes of Health (NIH)-Grant:NIA U24-AG041689
Funder	U.S. National Institutes of Health (NIH)-Grant:R01-GM099962
Funder	Howard Hughes Medical Institute International Predoctoral Fellowship
Funder	Subgrant from University of Alberta
Funder	Donation from Musea Ventures
Funder	Texas Advanced Computing Center
Funder	iPlant Collaborative
Funder	Health Research Formula Fund from the Pennsylvania Department of Health
Corresponding Creator	Tandy Warnow
Downloaded	434 times
Related Materials (2) Article Nguyen, Np.D., Mirarab, S., Kumar, K. et al. Ultra-large alignments using phylogeny-aware profiles. Genome Biol 16, 124 (2015). https://doi.org/10.1186/s13059-015-0688-z Article Mirarab, Siavash, Nam Nguyen, Sheng Guo, Li-San Wang, Junhyong Kim, and Tandy Warnow. “PASTA: Ultra-Large Multiple Sequence Alignment for Nucleotide and Amino-Acid Sequences.” Journal of Computational Biology 22, no. 5 (2015): 377–86. doi:10.1089/cmb.2014.0156