Data from: Statistically consistent divide-and-conquer pipelines for phylogeny estimation using NJMerge
Dataset Description |
This repository includes scripts and datasets for the paper, "Statistically consistent divide-and-conquer pipelines for phylogeny estimation using NJMerge." All data files in this repository are for analyses using the logdet distance matrix computed on the concatenated alignment. Data files for analyses using the average gene-tree internode distance matrix can be downloaded from the Illinois Data Bank (https://doi.org/10.13012/B2IDB-1424746_V1). The latest version of NJMerge can be downloaded from Github (https://github.com/ekmolloy/njmerge). List of Changes:
|
Subject |
Life Sciences |
Keywords |
divide-and-conquer; statistical consistency; species trees; incomplete lineage sorting; phylogenomics |
License |
CC0 |
Funder |
U.S. National Science Foundation (NSF)-Grant:CCF-1535977 |
Funder |
U.S. National Science Foundation (NSF)-Grant:DGE-1144245 |
Corresponding Creator |
Erin K. Molloy |
Downloaded |
4061 times |
| Version | DOI | Comment | Publication Date |
|---|---|---|---|
| 2 | 10.13012/B2IDB-0569467_V2 | Added additional information, new file as well as some corrections. Please refer to the dataset description for list of changes. | 2019-05-16 |
| 1 | 10.13012/B2IDB-0569467_V1 | 2018-11-19 |
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| RelatedMaterial | update: {"note"=>[nil, ""], "feature"=>[nil, false]} | 2024-02-05T21:20:51Z |
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| RelatedMaterial | update: {"note"=>[nil, ""], "feature"=>[nil, false]} | 2024-02-05T21:20:51Z |
| Dataset | update: {"description"=>["This repository includes scripts and datasets for the paper, \"Statistically consistent divide-and-conquer pipelines for phylogeny estimation using NJMerge.\" All data files in this repository are for analyses using the logdet distance matrix computed on the concatenated alignment. Data files for analyses using the average gene-tree internode distance matrix can be downloaded from the Illinois Data Bank (https://doi.org/10.13012/B2IDB-1424746_V2). The latest version of NJMerge can be downloaded from Github (https://github.com/ekmolloy/njmerge).<br />\r\n\r\n<strong>List of Changes:</strong>\r\n• Updated timings for NJMerge pipelines to include the time required to estimate distance matrices; this impacted files in the following folder: <strong>data.zip</strong>\r\n• Replaced \"Robinson-Foulds\" distance with \"Symmetric Difference\"; this impacted files in the following folders: <strong> tools.zip; data.zip; scripts.zip</strong>\r\n• Added some additional information about the java command used to run ASTRAL-III; this impacted files in the following folders: <strong>data.zip; astral64-trees.tar.gz (new)</strong>", "This repository includes scripts and datasets for the paper, \"Statistically consistent divide-and-conquer pipelines for phylogeny estimation using NJMerge.\" All data files in this repository are for analyses using the logdet distance matrix computed on the concatenated alignment. Data files for analyses using the average gene-tree internode distance matrix can be downloaded from the Illinois Data Bank (https://doi.org/10.13012/B2IDB-1424746_V1). The latest version of NJMerge can be downloaded from Github (https://github.com/ekmolloy/njmerge).<br />\r\n\r\n<strong>List of Changes:</strong>\r\n• Updated timings for NJMerge pipelines to include the time required to estimate distance matrices; this impacted files in the following folder: <strong>data.zip</strong>\r\n• Replaced \"Robinson-Foulds\" distance with \"Symmetric Difference\"; this impacted files in the following folders: <strong> tools.zip; data.zip; scripts.zip</strong>\r\n• Added some additional information about the java command used to run ASTRAL-III; this impacted files in the following folders: <strong>data.zip; astral64-trees.tar.gz (new)</strong>"]} | 2019-05-16T21:33:28Z |