Illinois Data Bank - Dataset

Simulation trajectories for "A DNA turbine powered by a transmembrane potential across a nanopore"
Cite this dataset:
Maffeo, Christopher; Aksimentiev, Aleksei (2023): Simulation trajectories for "A DNA turbine powered by a transmembrane potential across a nanopore". University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-3458097_V1
Dataset Description

Simulation trajectory data and scripts for Nature Nanotechnology manuscript "A DNA turbine powered by a transmembrane potential across a nanopore" that demonstrates a rationally designed nanoscale DNA-origami turbine with three chiral blades that uses a transmembrane electrochemical potential across a nanopore to drive a DNA bundle into sustained unidirectional rotations of up to 10 revolutions/s. Driven by the asymmetric mobility of a DNA duplex, the rotation direction of the turbine is set by its designed chirality and the salinity of the solvent.
Subject Physical Sciences
Keywords All-atom MD simulation; DNA; nanotechnology; motors and rotors
License CC BY
Funder U.S. National Science Foundation (NSF)-Grant:DMR-1827346
Corresponding Creator Aleksei Aksimentiev
Downloaded 205 times
Version DOI Comment Publication Date
1 10.13012/B2IDB-3458097_V1 2023-10-26

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RelatedMaterial create: {"material_type"=>"Code", "availability"=>nil, "link"=>"https://doi.org/10.5281/zenodo.8091178", "uri"=>"10.5281/zenodo.8091178", "uri_type"=>"DOI", "citation"=>"Xin Shi. (2023). Data for \"A DNA turbine powered by a transmembrane potential across a nanopore\" [Data set]. In A DNA turbine powered by a transmembrane potential across a nanopore. Zenodo. https://doi.org/10.5281/zenodo.8091178", "dataset_id"=>2565, "selected_type"=>"Code", "datacite_list"=>"IsSupplementTo", "note"=>nil, "feature"=>nil} 2023-10-31T16:41:26Z
RelatedMaterial update: {"link"=>["", "https://doi.org/10.1038/s41565-023-01527-8"], "uri"=>["", "10.1038/s41565-023-01527-8"], "uri_type"=>["", "DOI"], "citation"=>["Xin Shi, Anna-Katharina Pumm, Christopher Maffeo, Fabian Kohler, Elija Feigl, Wenxuan Zhao, Daniel Verschueren, Ramin Golestanian, Aleksei Aksimentiev, Hendrik Dietz, Cees Dekker. \"A DNA turbine powered by a transmembrane potential across a nanopores.\" Nature Nanotechnology", "Xin Shi, Anna-Katharina Pumm, Christopher Maffeo, Fabian Kohler, Elija Feigl, Wenxuan Zhao, Daniel Verschueren, Ramin Golestanian, Aleksei Aksimentiev, Hendrik Dietz, Cees Dekker. A DNA turbine powered by a transmembrane potential across a nanopores. Nat. Nanotechnol. (2023). https://doi.org/10.1038/s41565-023-01527-8"], "datacite_list"=>["", "IsSupplementTo"]} 2023-10-31T16:41:26Z