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RelatedMaterial
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update: {"datacite_list"=>["", "IsSupplementTo"]}
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2022-04-15T20:18:08Z
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RelatedMaterial
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update: {"uri"=>["", "https://github.com/jianhao2016/SimiC"], "uri_type"=>["", "URL"], "datacite_list"=>["", "IsSupplementedBy"]}
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2022-04-15T20:18:08Z
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RelatedMaterial
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create: {"material_type"=>"Article", "availability"=>nil, "link"=>"https://doi.org/10.1038/s42003-022-03319-7", "uri"=>"10.1038/s42003-022-03319-7", "uri_type"=>"DOI", "citation"=>"Peng, J., Serrano, G., Traniello, I.M. et al. SimiC enables the inference of complex gene regulatory dynamics across cell phenotypes. Commun Biol 5, 351 (2022). https://doi.org/10.1038/s42003-022-03319-7", "dataset_id"=>2072, "selected_type"=>"Article", "datacite_list"=>"IsSupplementTo"}
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2022-04-15T20:16:41Z
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Dataset
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update: {"description"=>["This dataset contains the ClonalKinetic dataset that was used in SimiC and its intermediate results for comparison. The Detail description can be found in the text file 'clonalKinetics_Example_data_description.txt' and 'ClonalKinetics_filtered.DF_data_description.txt'. The required input data for SimiC contains: \r\n1. ClonalKinetics_filtered.clustAssign.txt => cluster assignment for each cell. \r\n2. ClonalKinetics_filtered.DF.pickle => filtered scRNAseq matrix. \r\n3. ClonalKinetics_filtered.TFs.pickle => list of driver genes. \r\n\r\nThe results after running SimiC contains:\r\n1. ClonalKinetics_filtered_L10.01_L20.01_Ws.pickle => inferred GRNs for each cluster\r\n2. ClonalKinetics_filtered_L10.01_L20.01_AUCs.pickle => regulon activity scores for each cell and each driver gene.", "This dataset contains the ClonalKinetic dataset that was used in SimiC and its intermediate results for comparison. The Detail description can be found in the text file 'clonalKinetics_Example_data_description.txt' and 'ClonalKinetics_filtered.DF_data_description.txt'. The required input data for SimiC contains: \r\n1. ClonalKinetics_filtered.clustAssign.txt => cluster assignment for each cell. \r\n2. ClonalKinetics_filtered.DF.pickle => filtered scRNAseq matrix. \r\n3. ClonalKinetics_filtered.TFs.pickle => list of driver genes. \r\n\r\nThe results after running SimiC contains:\r\n1. ClonalKinetics_filtered_L10.01_L20.01_Ws.pickle => inferred GRNs for each cluster\r\n2. ClonalKinetics_filtered_L10.01_L20.01_AUCs.pickle => regulon activity scores for each cell and each driver gene.\r\n\r\n<b>NOTE:</b> “ClonalKinetics_filtered.rds” file which is mentioned in “ClonalKinetics_filtered.DF_data_description.txt” is an intermediate file and the authors have put all the processed in the pickle/txt file as described in the filtered data text."]}
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2021-10-11T18:36:07Z
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Dataset
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update: {"release_date"=>[nil, Mon, 11 Oct 2021], "publication_state"=>["file embargo", "released"]}
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2021-10-11T15:21:10Z
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Dataset
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update: {"release_date"=>[Wed, 05 Oct 2022, nil]}
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2021-10-11T15:21:10Z
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