Illinois Data Bank - Dataset

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TIPP3 Reference Package for Abundance Profiling
Cite this dataset:
Shen, Chengze; Wedell, Eleanor; Warnow, Tandy (2024): TIPP3 Reference Package for Abundance Profiling. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-4931852_V1
Dataset Description

This is a reference package to be used with the TIPP3 software for abundance profiling of metagenomic reads sampled from a microbial community.
TIPP3 software: https://github.com/c5shen/TIPP3

Usage:
1. unzip the file to a local directory (will get a folder named "tipp3-refpkg").
2. use with TIPP3 software: `tipp3.py -r [path/to/tipp3-refpkg] [other parameters]`
Subject Technology and Engineering
Keywords TIPP3; abundance profile; reference database; taxonomic identification
License CC0
Funder U.S. National Science Foundation (NSF)-Grant:2006069
Corresponding Creator Chengze Shen
Downloaded 95 times
Version DOI Comment Publication Date
2 10.13012/B2IDB-4931852_V2 Fixed old typos in the file mapping txt, and added a new file for new functions of the relevant software TIPP3. 2025-04-21
1 10.13012/B2IDB-4931852_V1 2024-10-25

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