Illinois Data Bank - Dataset

FASTA file of the final sequence alignment used in the haplotype analyses of Culex pipiens complex populations collected in south-eastern Illinois (2016-2017)
Cite this dataset:
Trivellone, Valeria; Cao, Yanghui; Blackshear, Millon; Kim, Chang-Hyun; Stone, Christopher (2022): FASTA file of the final sequence alignment used in the haplotype analyses of Culex pipiens complex populations collected in south-eastern Illinois (2016-2017). University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-5032907_V1
Dataset Description

The Culex_Trivellone_etal.fas fasta file contains the original final sequence alignment used in the haplotype analyses of Trivellone et al. (Frontiers in Public Health, under review). The 492 sequences (from specimens of Culex pipiens complex collected in different habitat types using a BG-sentinel traps) were aligned using PASTA v1.8.5 under default settings. The final dataset contains 686 positions of the cytochrome c oxidase subunit I (COI) mitochondrial gene.
The data analyses are further described in the cited original paper.
Subject Life Sciences
Keywords Culex; Culicidae; COI; mosquito surveillance, species assemblages
License CC0
Funder State of Illinois Used Tire Management
Funder Emergency Public Health
Corresponding Creator Valeria Trivellone
Downloaded 209 times
Version DOI Comment Publication Date
1 10.13012/B2IDB-5032907_V1 2022-02-11

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Dataset update: {"title"=>["FASTA file of the final sequence alignment used in the haplotype analyses of Culex pipiens complex populations collected in south-eastern Illinois (2016-2017). University of Illinois at Urbana-Champaign. ", "FASTA file of the final sequence alignment used in the haplotype analyses of Culex pipiens complex populations collected in south-eastern Illinois (2016-2017)"]} 2024-07-19T19:39:20Z
RelatedMaterial update: {"note"=>[nil, ""]} 2024-07-19T19:38:52Z
Dataset update: {"title"=>["Trivellone, Valeria; Cao, Yanghui; Blackshear, Millon ; Kim, Chang-Hyun ; Stone, Christopher (2022): FASTA file of the final sequence alignment used in the haplotype analyses of Culex pipiens complex populations collected in south-eastern Illinois (2016-2017). University of Illinois at Urbana-Champaign. ", "FASTA file of the final sequence alignment used in the haplotype analyses of Culex pipiens complex populations collected in south-eastern Illinois (2016-2017). University of Illinois at Urbana-Champaign. "]} 2024-07-19T19:38:52Z
RelatedMaterial update: {"uri"=>[nil, ""], "uri_type"=>[nil, ""], "datacite_list"=>[nil, ""]} 2022-02-14T15:48:40Z
Dataset update: {"version_comment"=>[nil, ""], "subject"=>[nil, "Life Sciences"]} 2022-02-14T15:48:40Z