Parsed Open Citations and PubMed Data
Cite this dataset:
Mohasel Arjomandi, Hossein; Korobskiy, Dmitriy; Chacko, George (2024): Parsed Open Citations and PubMed Data. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-5216575_V1
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Dataset Description

This dataset contains five files. (i) open_citations_jan2024_pub_ids.csv.gz, open_citations_jan2024_iid_el.csv.gz, open_citations_jan2024_el.csv.gz, and open_citation_jan2024_pubs.csv.gz represent a conversion of Open Citations to an edge list using integer ids assigned by us. The integer ids can be mapped to omids, pmids, and dois using the open_citation_jan2024_pubs.csv and open_citations_jan2024_pub_ids.scv files. The network consists of 121,052,490 nodes and 1,962,840,983 edges. Code for generating these data can be found https://github.com/chackoge/ERNIE_Plus/tree/master/OpenCitations.

(ii) The fifth file, baseline2024.csv.gz, provides information about the metadata of PubMed papers. A 2024 version of PubMed was downloaded using Entrez and parsed into a table restricted to records that contain a pmid, a doi, and has a title and an abstract. A value of 1 in columns indicates that the information exists in metadata and a zero indicates otherwise. Code for generating this data: https://github.com/illinois-or-research-analytics/pubmed_etl

Subject Technology and Engineering
Keywords PubMed
License CC BY
Corresponding Creator George Chacko
Downloaded 40 times
Version DOI Comment Publication Date
1 10.13012/B2IDB-5216575_V1 2024-02-16
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RelatedMaterial update: {"datacite_list"=>["IsSupplementedBy ", "IsSupplementedBy"]} 2024-04-18T18:23:38Z
RelatedMaterial update: {"datacite_list"=>["IsSupplementedBy ", "IsSupplementedBy"]} 2024-04-18T18:23:38Z
Dataset update: {"publication_state"=>["metadata embargo", "released"]} 2024-02-16T08:00:08Z
RelatedMaterial update: {"note"=>[nil, ""], "feature"=>[nil, false]} 2024-02-13T20:22:41Z
RelatedMaterial update: {"material_type"=>["Dataset", "Article"], "link"=>["https://pubmed.ncbi.nlm.nih.gov/", "https://doi.org/10.1093/nar/gkab1112"], "uri"=>["https://pubmed.ncbi.nlm.nih.gov/", "10.1093/nar/gkab1112"], "uri_type"=>["URL", "DOI"], "selected_type"=>["Dataset", "Article"]} 2024-02-13T20:22:41Z
RelatedMaterial update: {"material_type"=>["Dataset", "Article"], "link"=>["https://opencitations.net/", "https://doi.org/10.1162/qss_a_00023"], "uri"=>["https://opencitations.net/", "10.1162/qss_a_00023"], "uri_type"=>["URL", "DOI"], "selected_type"=>["Dataset", "Article"]} 2024-02-13T20:22:41Z