Simulation Data for JUMPER: Discontinuous Transcript Assembly in SARS-CoV-2
Citation:
Sashittal, Palash; Zhang, Chuanyi; El-Kebir, Mohammed (2020): Simulation Data for JUMPER: Discontinuous Transcript Assembly in SARS-CoV-2. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-6667667_V1
Persistent link for this dataset:
Dataset Description

This data contains bam files and transcripts in the simulated instances generated for the paper 'JUMPER: Discontinuous Transcript Assembly in SARS-CoV-2' submitted for RECOMB 2021. The folder 'bam' contained the simulated bam files aligned using STAR wile the reads were generated using the method polyester

Note: in the readme file, close to the end of the document, please ignore this sentence: 'Those files can be opened by using [name of software].'

Subject Life Sciences
Keywords transcript assembly; SARS-CoV-2; discontinuous transcription; coronaviruses
License CC0
Funder U.S. National Science Foundation (NSF) - Grant: CCF-2027669
Corresponding Creator Mohammed El-Kebir
Downloaded 177 times

Related Materials:
   Code https://github.com/elkebir-group/Jumper
   Article Palash Sashittal, Chuanyi Zhang, Jian Peng, Mohammed El-Kebir. 2021. Jumper Enables Discontinuous Transcript Assembly in Coronaviruses. bioRxiv doi: https://doi.org/10.1101/2021.02.12.431026
Version DOI Comment Publication Date
1 10.13012/B2IDB-6667667_V1 2020-11-06
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update: {"description"=>["This data contains bam files and transcripts in the simulated instances generated for the paper 'JUMPER: Discontinuous Transcript Assembly in SARS-CoV-2' submitted for RECOMB 2021. The folder 'bam' contained the simulated bam files aligned using STAR wile the reads were generated using the method polyester.", "This data contains bam files and transcripts in the simulated instances generated for the paper 'JUMPER: Discontinuous Transcript Assembly in SARS-CoV-2' submitted for RECOMB 2021. The folder 'bam' contained the simulated bam files aligned using STAR wile the reads were generated using the method polyester\r\n\r\nNote: in the readme file, close to the end of the document, please ignore this sentence: 'Those files can be opened by using [name of software].' "]} 2020-11-08T02:55:59Z
update: {"subject"=>["", "Life Sciences"]} 2020-11-08T02:52:02Z