Stability of gastric fluid and fecal microbial populations in healthy horses under pasture and stable conditions

Bishop, Rebecca C.; Kemper, Ann M.; Clark, Lindsay V.; Wilkins, Pamela A.; McCoy, Annette M.

doi:10.13012/B2IDB-7053728_V1

Illinois Data Bank - Dataset

Stability of gastric fluid and fecal microbial populations in healthy horses under pasture and stable conditions

Cite this dataset:

Bishop, Rebecca C.; Kemper, Ann M.; Clark, Lindsay V.; Wilkins, Pamela A.; McCoy, Annette M. (2024): Stability of gastric fluid and fecal microbial populations in healthy horses under pasture and stable conditions. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-7053728_V1

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Dataset Description	Healthy mares were kept at pasture for 3 weeks, stabled for 5 weeks, returned to pasture and an final sample collected 6 weeks later. Samples were collected weekly: gastric fluid by double-tube nasogastric intubation and aspiration, feces by rectal palpation. Microbial DNA was isolated using the QIAamp PowerFecal Pro DNA kit. Full length 16S, ITS and partial 23S rRNA gene libraries were created using the Shoreline Complete ID kit.
Subject	Life Sciences
License	CC BY
Funder	University of Illinois College of Veterinary Medicine Student Research Course VM622
Corresponding Creator	Rebecca C. Bishop
Downloaded	209 times

Versions

Version	DOI	Comment	Publication Date
1	10.13012/B2IDB-7053728_V1		2024-12-01

Files


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README_animals_gastric fecal micriobome.txt 5.76 KB File
Interactive Plots for Publication.zip 1.52 MB File
data_fecal_deseq2_normalized.csv 2.23 MB File
data_fecal_glom.csv 1.29 MB File
data_fecal_proportions.csv 2.47 MB File
data_fecal_raw.csv 6.04 MB File
data_gastric_deseq2_normalized.csv 337 KB File
data_gastric_glom.csv 211 KB File
data_gastric_proportions.csv 367 KB File
data_gastric_raw.csv 1.07 MB File
horse_data.csv 292 Bytes File
sample_clinical_metadata.csv 6.51 KB File
sample_metadata.csv 9.14 KB File

Change Log

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Dataset	update: {"publication_state"=>["file embargo", "released"]}	2024-12-01T14:00:08Z