Illinois Data Bank - Dataset

RAD-seq genotypes for a Miscanthus sacchariflorus diversity panel
Cite this dataset:
Clark, Lindsay; Njuguna, Joyce; Jin, Xiaoli; Petersen, Karen; Anzoua, Kossanou G.; Bagmet, Larissa; Chebukin, Pavel; Deuter, Martin; Dzyubenko, Elena; Dzyubenko, Nicolay; Heo, Kweon; Johnson, Douglas A.; Jørgensen, Uffe; Kjeldsen, Jens B.; Nagano, Hironori; Peng, Junhua; Sabitov, Andrey; Yamada, Toshihiko; Yoo, Ji Hye; Yu, Chang Yeon; Long, Stephen P.; Sacks, Erik (2020): RAD-seq genotypes for a Miscanthus sacchariflorus diversity panel. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-8170405_V1
Dataset Description

Restriction site-associated DNA sequencing (RAD-seq) data from 643 Miscanthus accessions from a diversity panel, including 613 Miscanthus sacchariflorus, three M. sinensis, and 27 M. xgiganteus. DNA was digested with PstI and MspI, and single-end Illumina sequencing was performed adjacent to the PstI site. Variant and genotype calling was performed with TASSEL-GBSv2, using the Miscanthus sinensis v7.1 reference genome from Phytozome 12 (https://phytozome.jgi.doe.gov). Additional ploidy-aware genotype calling was performed by polyRAD v1.1.
Subject Life Sciences
Keywords variant call format (VCF); genotyping-by-sequencing (GBS); single nucleotide polymorphism (SNP); grass; genetic diversity; biomass
License CC BY
Funder U.S. Department of Energy (DOE)-Grant:DE-SC0012379
Funder U.S. Department of Energy (DOE)-Grant:DE-SC0006634
Funder U.S. Department of Agriculture (USDA)-Grant:Cooperative Agreement #59-1275-1-338
Funder Energy Biosciences Institute
Funder U.S. National Science Foundation (NSF)-Grant:1161490
Corresponding Creator Erik Sacks
Downloaded 457 times
Version DOI Comment Publication Date
1 10.13012/B2IDB-8170405_V1 2020-09-18

Open in Globus File Manager what's this?
4.46 KB File
84.4 KB File
16.2 GB File
1.21 GB File
496 MB File
536 KB File
5.38 GB File
2.81 KB File
299 KB View File
1.54 GB File
3.7 GB File
1.54 GB File
406 MB File
11.2 KB View File

Contact the Research Data Service for help interpreting this log.

RelatedMaterial update: {"uri"=>["", "https://www.ncbi.nlm.nih.gov/bioproject/PRJNA294794"], "uri_type"=>["", "URL"], "datacite_list"=>["", "IsSupplementedBy"]} 2023-08-01T18:39:17Z
RelatedMaterial update: {"uri"=>["", "https://www.ncbi.nlm.nih.gov/bioproject/PRJNA261699"], "uri_type"=>["", "URL"], "datacite_list"=>["", "IsSupplementedBy"]} 2023-08-01T18:39:17Z
RelatedMaterial update: {"uri"=>["", "https://www.ncbi.nlm.nih.gov/bioproject/PRJNA342314"], "uri_type"=>["", "URL"], "datacite_list"=>["", "IsSupplementedBy"]} 2023-08-01T18:39:17Z
RelatedMaterial update: {"uri"=>["", "https://www.ncbi.nlm.nih.gov/bioproject/PRJNA207721"], "uri_type"=>["", "URL"], "datacite_list"=>["", "IsSupplementedBy"]} 2023-08-01T18:39:17Z
RelatedMaterial update: {"uri"=>["", "10.1101/2020.01.11.902890"], "uri_type"=>["", "DOI"], "datacite_list"=>["", "IsSupplementedBy"]} 2023-08-01T18:39:17Z
RelatedMaterial update: {"uri"=>["", "10.13012/B2IDB-0170190_V3"], "uri_type"=>["", "DOI"], "datacite_list"=>["", "IsSupplementedBy"]} 2023-08-01T18:39:17Z
Creator update: {"identifier"=>["", "0000-0003-2008-3387"]} 2023-03-10T20:38:59Z
RelatedMaterial update: {"uri"=>[nil, ""], "uri_type"=>[nil, ""], "datacite_list"=>[nil, ""]} 2020-09-21T19:15:28Z
RelatedMaterial update: {"uri"=>[nil, ""], "uri_type"=>[nil, ""], "datacite_list"=>[nil, ""]} 2020-09-21T19:15:28Z
RelatedMaterial update: {"uri"=>[nil, ""], "uri_type"=>[nil, ""], "datacite_list"=>[nil, ""]} 2020-09-21T19:15:28Z
RelatedMaterial update: {"uri"=>[nil, ""], "uri_type"=>[nil, ""], "datacite_list"=>[nil, ""]} 2020-09-21T19:15:28Z
RelatedMaterial update: {"uri"=>[nil, ""], "uri_type"=>[nil, ""], "datacite_list"=>[nil, ""]} 2020-09-21T19:15:28Z
RelatedMaterial update: {"uri"=>[nil, ""], "uri_type"=>[nil, ""], "datacite_list"=>[nil, ""]} 2020-09-21T19:15:28Z
Dataset update: {"version_comment"=>[nil, ""], "subject"=>[nil, "Life Sciences"]} 2020-09-21T19:15:28Z