Sequence alignment and data partitions for phylogenomic analyses of tribe Darnini
Dataset Description |
These data files were used for phylogenomic analyses of Darnini and related Membracidae (Hemiptera: Auchenorrhyncha) in the referenced article by Gonzalez-Mozo et al. The "mem_50p_alignment.fasta" file contains the aligned, concatenated nucleotide sequence data for 52 species and 494 genetic loci included in the phylogenetic analyses ("N" indicates missing data and "-" indicates an alignment gap). The file "Table 1.rtf" lists the included species, country of origin and genbank accession number. Species newly sequenced for this study have a Sample ID with prefix "DAR"; previously sequenced species for which data were downloaded from genbank have "NCBI" indicated in the same column of the table. The file "partition_def_50p.txt" lists the 494 genetic loci included in the alignment with their exact positions indicated by the range of numbers given at the end of each line (e.g., locus "uce-1" occupies positions 1-280 in the alignment). |
Subject |
Life Sciences |
Keywords |
Insecta; Hemiptera; anchored-hybrid enrichment; phylogeny; treehopper |
License |
CC0 |
Funder |
U.S. National Science Foundation (NSF)-Grant:DEB-1639601 and DEB-2244871 |
Corresponding Creator |
Christopher Dietrich |
Downloaded |
117 times |
| Version | DOI | Comment | Publication Date |
|---|---|---|---|
| 2 | 10.13012/B2IDB-8512696_V2 | The reviews of the manuscript with which this dataset is associated suggested that changes were needed that required editing the previously deposited data. The editor also requested that additional data files not included in the original deposit be added. | 2025-04-23 |
| 1 | 10.13012/B2IDB-8512696_V1 | 2025-03-05 |
Contact the Research Data Service for help interpreting this log.
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| RelatedMaterial | destroy: {"material_type"=>"Article", "availability"=>nil, "link"=>"", "uri"=>"", "uri_type"=>"", "citation"=>"Gonzalez-Mozo, L.C., Dietrich, C.H., Cao, Y, Newton, L.G, and Ware, J.L. (in review) Evolution of defensive strategies in the treehopper tribe Darnini (Hemiptera: Membracidae) revisited using anchored hybrid enrichment data. Systematic Entomology", "dataset_id"=>2904, "selected_type"=>"Article", "datacite_list"=>"", "note"=>"", "feature"=>nil} | 2025-03-12T19:46:25Z |