Illinois Data Bank

Sequence alignment and data partitions for phylogenomic analyses of tribe Darnini

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These data files were used for phylogenomic analyses of Darnini and related Membracidae (Hemiptera: Auchenorrhyncha) in the referenced article by Gonzalez-Mozo et al. The "mem_50p_alignment.fasta" file contains the aligned, concatenated nucleotide sequence data for 52 species and 494 genetic loci included in the phylogenetic analyses ("N" indicates missing data and "-" indicates an alignment gap). The file "Table 1.rtf" lists the included species, country of origin and genbank accession number. Species newly sequenced for this study have a Sample ID with prefix "DAR"; previously sequenced species for which data were downloaded from genbank have "NCBI" indicated in the same column of the table. The file "partition_def_50p.txt" lists the 494 genetic loci included in the alignment with their exact positions indicated by the range of numbers given at the end of each line (e.g., locus "uce-1" occupies positions 1-280 in the alignment).

Life Sciences
Insecta; Hemiptera; anchored-hybrid enrichment; phylogeny; treehopper
CC0
U.S. National Science Foundation (NSF)-Grant:DEB-1639601 and DEB-2244871
Christopher Dietrich
117 times
Version DOI Comment Publication Date
2 10.13012/B2IDB-8512696_V2 The reviews of the manuscript with which this dataset is associated suggested that changes were needed that required editing the previously deposited data. The editor also requested that additional data files not included in the original deposit be added. 2025-04-23
1 10.13012/B2IDB-8512696_V1 2025-03-05

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