Illinois Data Bank - Dataset

Biological and Simulated datasets for testing the SCAMPP framework for phylogenetic placement methods
Cite this dataset:
Wedell, Eleanor; Warnow, Tandy (2022): Biological and Simulated datasets for testing the SCAMPP framework for phylogenetic placement methods. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-9257957_V1
Dataset Description

Thank you for using these datasets!

These files contain trees and reference alignments, as well as the selected query sequences for testing phylogenetic placement methods against and within the SCAMPP framework.

There are four datasets from three different sources, each containing their source alignment and "true" tree, any estimated trees that may have been generated, and any re-estimated branch lengths that were created to be used with their requisite phylogenetic placement method.

Three biological datasets (16S.B.ALL, PEWO/LTP_s128_SSU, and PEWO/green85) and one simulated dataset (nt78) is contained. See README.txt in each file for more information.

Subject Technology and Engineering
Keywords Phylogenetic Placement; Phylogenetics; Maximum Likelihood; pplacer; EPA-ng
License CC0
Funder U.S. National Science Foundation (NSF)-Grant:1458652
Funder U.S. National Science Foundation (NSF)-Grant:2006069
Corresponding Creator Tandy Warnow
Downloaded 219 times
Version DOI Comment Publication Date
1 10.13012/B2IDB-9257957_V1 2022-04-29

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Dataset update: {"title"=>["Biological and Simulated datasets for testing the SCAMPP framework for phylogenetic placement methods.", "Biological and Simulated datasets for testing the SCAMPP framework for phylogenetic placement methods"]} 2022-04-29T04:21:43Z