Experiment and simulation raw data for "Electrical recognition of the twenty proteinogenic amino acids using an aerolysin nanopore"
Citation:
Ouldali, Hadjer; Sarthak, Kumar; Ensslen, Tobias; Piguet, Fabien; Manivet, Philippe; Pelta, Juan; Behrends, Jan C.; Aksimentiev, Aleksei; Oukhaled, Abdelghani (2019): Experiment and simulation raw data for "Electrical recognition of the twenty proteinogenic amino acids using an aerolysin nanopore". University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-4905767_V1
If you use this dataset, please cite it.
Related Article Ouldali, H., Sarthak, K., Ensslen, T. et al. Electrical recognition of the twenty proteinogenic amino acids using an aerolysin nanopore. Nat Biotechnol (2019) doi:10.1038/s41587-019-0345-2
Dataset Description

Raw MD simulation trajectory, input and configuration files, SEM current data, and experimental raw data accompanying the publication, "Electrical recognition of the twenty proteinogenic amino acids using an aerolysin nanopore". README.md contains a description of all associated files.

Subject Technology and Engineering
Keywords molecular dynamics; protein sequencing; aerolysin; nanopore sequencing
License CC BY
Funder Agence Nationale de la Recherche ANR - Grant: ANR-17-CE09-0032-01, ANR-17-CE09-0044-02
Funder Direction Generale de l'Armement - Grant: n 2017 60 0042
Funder Region Ile-de-France in the framework of DIM ResPore - Grant: n 2017-05
Funder U.S. National Institutes of Health (NIH) - Grant: R01-HG007406
Funder U.S. National Institutes of Health (NIH) - Grant: P41-GM104601
Funder U.S. National Science Foundation (NSF) - Grant: PHY-1430124
Corresponding Creator Aleksei Aksimentiev
Downloaded 909 times
Version DOI Comment Publication Date
1 10.13012/B2IDB-4905767_V1 2019-10-23
2018_04_12_0002.abf 917 MB File
2018_04_12_0007.abf 916 MB File
2018_04_12_0015.abf 927 MB File
2018_04_12_0017.abf 919 MB File
2018_04_12_0018.abf 919 MB File
2018_04_12_0019.abf 920 MB File
2018_04_12_0020.abf 811 MB File
2018_04_16_0003.abf 925 MB File
2018_04_16_0004.abf 946 MB File
2018_04_19_0005.abf 918 MB File
2018_04_26_0002.abf 904 MB File
2018_05_03_0001.abf 917 MB File
2018_05_04_0002.abf 918 MB File
2018_05_09_0004.abf 1010 MB File
2018_05_09_0013.abf 955 MB File
2018_05_15_0001.abf 954 MB File
2018_05_16_0001.abf 918 MB File
2018_05_16_0005.abf 765 MB File
2018_05_17_0003.abf 919 MB File
2018_05_17_0004.abf 917 MB File
2018_05_18_0007.abf 919 MB File
2018_05_23_0001.abf 926 MB File
2018_05_23_0004.abf 918 MB File
2018_07_17_0002.abf 869 MB File
2018_07_20_0006.abf 861 MB File
2018_07_20_0009.abf 861 MB File
2018_07_20_0010.abf 145 MB File
2018_07_20_0011.abf 307 MB File
2018_07_20_0013.abf 153 MB File
2018_07_20_0016.abf 859 MB File
2019_03_25_0006.abf 864 MB File
2019_04_01_0004.abf 870 MB File
2019_04_01_0005.abf 861 MB File
2019_04_01_0006.abf 847 MB File
2019_04_15_0001-s1.abf 961 MB File
2019_05_15_0002_4 M KCl 4M KNO3 8µL IuL invPore-s1.abf 1.13 GB File
2019_06_05_0001.abf 860 MB File
2019_06_05_0002.abf 860 MB File
2019_06_06_0001.abf 862 MB File
2019_06_06_0002.abf 860 MB File
2019_06_19_0001.abf 888 MB File
2019_06_20_0001.abf 872 MB File
2019_06_20_0003.abf 899 MB File
4M KCl Peptide 1a2 -50mV-s1.abf 761 MB File
4M KCl Peptide1-4-s1.abf 855 MB File
MD_aero.pdb 33.7 MB File
MD_aero.psf 65.5 MB File
MD_aero_LANGEVIN.pdb 33.7 MB File
MD_aero_RR7.pdb 33.7 MB File
MD_aero_RR7.psf 65.6 MB File
MD_aero_SMD.pdb 33.7 MB File
MD_aero_SMD_CA.pdb 33.7 MB File
MD_aero_SMD_LANGEVIN.pdb 33.7 MB File
MD_aero_equil.restart.coor 10.2 MB File
MD_aero_equil.restart.vel 10.2 MB File
MD_aero_equil.restart.xsc 307 Bytes File
MD_aero_restraint.pdb 33.7 MB File
MD_equil.namd 4.14 KB File
MD_smd-1.dcd 1.12 GB File
MD_smd-1.psf 41.3 MB File
MD_smd-2.dcd 1.13 GB File
MD_smd-2.psf 41.3 MB File
MD_smd.namd 4.16 KB File
README.md 9.21 KB File
SEM-AR7-SMD1.dat 20 KB File
SEM-AR7-SMD2.dat 20.2 KB File
SEM-GR7-SMD1.dat 20 KB File
SEM-GR7-SMD2.dat 20.2 KB File
SEM-HR7-SMD1.dat 20 KB File
SEM-HR7-SMD2.dat 20.2 KB File
SEM-RR4-SMD1.dat 70.5 KB File
SEM-RR4-SMD2.dat 74.9 KB File
SEM-RR5-SMD1.dat 52.9 KB File
SEM-RR5-SMD2.dat 56.4 KB File
SEM-RR6-SMD1.dat 35.3 KB File
SEM-RR6-SMD2.dat 37.7 KB File
SEM-RR7-SMD1.dat 17.7 KB File
SEM-RR7-SMD2.dat 18 KB File
SEM-TR7-SMD1.dat 20 KB File
SEM-TR7-SMD2.dat 20.2 KB File
par_all36_dphpc.str 317 Bytes File
par_all36_lipid.prm 28.3 KB File
par_all36_prot.prm 177 KB File
par_water_ions_cufix.prm 7 KB File
top_all36_prot.rtf 71.6 KB File
toppar_all36_dphpc.str 22.1 KB File

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