Illinois Data Bank - Dataset

Data for: A molecular phylogenetic analysis of the genera of fruit doves and their allies using dense taxonomic sampling
Cite this dataset:
Nowak, Jennifer E.; Sweet, Andrew D.; Weckstein, Jason D.; Johnson, Kevin P. (2019): Data for: A molecular phylogenetic analysis of the genera of fruit doves and their allies using dense taxonomic sampling. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-9797270_V1
Dataset Description

Multiple sequence alignments from concatenated nuclear and mitochondrial genes and resulting phylogenetic tree files of fruit doves and their close relatives. Files include: BEAST input XML file (fruit_dove_beast_input.xml); a maximum clade credibility tree from a BEAST analysis (fruit_dove_beast_mcc.tre); concatenated multiple sequence alignment NEXUS files for the novel dataset (fruit_dove_concatenated_alignment.nex, 76 taxa, 4,277 characters) and the dataset with additional sequences (fruit_dove_plus_cibois_data_concatenated_alignment.nex, 204 taxa, 4,277 characters), both of which contain a MrBayes block including partition information; and 50% majority-rule consensus trees generated from MrBayes analyses, using the NEXUS alignment files as inputs (fruit_dove_mrbayes_consensus.tre, fruit_dove_plus_cibois_data_mrbayes_consensus.tre).
Subject Life Sciences
Keywords fruit doves; multiple sequence alignment; phylogeny; Aves: Columbidae
License CC0
Funder U.S. National Science Foundation (NSF)-Grant:DEB-0118794
Funder U.S. National Science Foundation (NSF)-Grant:DEB-0612938
Funder U.S. National Science Foundation (NSF)-Grant:DEB-1050706
Funder U.S. National Science Foundation (NSF)-Grant:DEB-1239788
Funder U.S. National Science Foundation (NSF)-Grant:DEB-1342604
Corresponding Creator Andrew D. Sweet
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Version DOI Comment Publication Date
1 10.13012/B2IDB-9797270_V1 2019-08-13

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RelatedMaterial update: {"datacite_list"=>["", "IsSupplementTo"]} 2019-08-30T18:19:36Z
Dataset update: {"subject"=>["", "Life Sciences"]} 2019-08-30T18:19:36Z
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Dataset update: {"version_comment"=>[nil, ""], "subject"=>[nil, ""]} 2019-08-21T14:40:07Z