Alternative approaches for uncovering phytoplasma biodiversity and vector associations
Cite this dataset:
Trivellone, Valeria; Cao, Yanghui; Dietrich, Christopher (2022): Alternative approaches for uncovering phytoplasma biodiversity and vector associations. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-9804959_V1
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Dataset Description

This dataset contains nucleotide sequences of 16S rRNA gene from phytoplasmas and other bacteria detected in phloem-feeding insects (Hemiptera, Auchenorrhyncha). The datasets were used to compare traditional Sanger sequencing with a next-generation sequencing method, Anchored Hybrid Enrichment (AHE) for detecting and characterizing phytoplasmas in insect DNA samples.

The file “Trivellone_etal_SangerSequencing.fas”, comprising 1397 positions (the longest sequence), includes 35 not aligned bacterial 16S rRNA sequences (16 phytoplasmas and 19 other bacterial strains) yielded using Sanger sequencing.
The file “Trivellone_etal_AHEmethod1.fas” includes 34 not aligned bacterial 16S rRNA sequences (28 phytoplasmas and 6 other bacterial strains) and it contains 1530 positions (the longest sequence). Each sequence was assembled using assembled based on ABySS v2.1.0 pipeline.
The file “Trivellone_etal_AHEmethod2.fas” includes 31 not aligned bacterial 16S rRNA sequences (27 phytoplasmas and 4 other bacterial strains) and it contains 1530 positions (the longest sequence). Each sequence was assembled based on the HybPiper v2.0.1 pipeline .
Additional details in the "read_me_trivellone.txt" file attached below.
Subject Life Sciences
Keywords anchored hybrid enrichment; biodiversity, biorepository; nested PCR; Sanger sequencing
License CC0
Funder U.S. National Science Foundation (NSF)-Grant:DEB 16-39601
Corresponding Creator Valeria Trivellone
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Version DOI Comment Publication Date
1 10.13012/B2IDB-9804959_V1 2022-06-10
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update: {"nested_updated_at"=>[nil, Tue, 05 Jul 2022 15:17:22.825612000 UTC +00:00]} 2024-01-03T18:24:05Z
update: {"version_comment"=>[nil, ""], "subject"=>[nil, "Life Sciences"]} 2022-06-15T15:45:25Z