Illinois Data Bank - Dataset

A newer version of this dataset is available. View the latest version.
Data from: Genome-wide association and genomic prediction for biomass yield in Miscanthus sinensis phenotyped in Asia and North America
Cite this dataset:
Clark, Lindsay V.; Dwiyanti, Maria S.; Anzoua, Kossonou G.; Brummer, Joe E.; Głowacka, Katarzyna; Hall, Megan; Heo, Kweon; Jin, Xiaoli; Lipka, Alexander E.; Peng, Junhua; Yamada, Toshihiko; Yoo, Ji Hye; Yu, Chang Yeon; Zhao, Hua; Long, Stephen P.; Sacks, Erik J. (2017): Data from: Genome-wide association and genomic prediction for biomass yield in Miscanthus sinensis phenotyped in Asia and North America. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-0790815_V1
Dataset Description

This dataset contains genotypic and phenotypic data, R scripts, and the results of analysis pertaining to a multi-location field trial of Miscanthus sinensis. Genome-wide association and genomic prediction were performed for biomass yield and 14 yield-component traits across six field trial locations in Asia and North America, using 46,177 single-nucleotide polymorphism (SNP) markers mined from restriction site-associated DNA sequencing (RAD-seq) and 568 M. sinensis accessions. Genomic regions and candidate genes were identified that can be used for breeding improved varieties of M. sinensis, which in turn will be used to generate new M. xgiganteus clones for biomass.
Subject Life Sciences
Keywords miscanthus; genotyping-by-sequencing (GBS); genome-wide association studies (GWAS); genomic selection
License CC BY
Funder U.S. Department of Energy (DOE)-Grant:DE-SC0006634
Corresponding Creator Erik J. Sacks
Downloaded 3001 times
Version DOI Comment Publication Date
3 10.13012/B2IDB-0790815_V3 One R script was updated and an another was added in response to peer review 2019-03-25
2 10.13012/B2IDB-0790815_V2 Updated files from v1 2018-12-19
1 10.13012/B2IDB-0790815_V1 2017-11-29

Open in Globus what's this?
8.89 KB File
17.7 KB File
2.72 MB File
15.1 KB File
55 KB File
9.39 MB File
15.9 KB File
1.32 KB File
2.9 KB File
19.9 KB File
1.29 MB File
10.1 KB File
11.6 KB File
17.5 KB File
6.57 KB File
1.57 KB File
19.2 KB File
18.1 KB File
42.6 KB File
125 MB View File
953 MB File
4.85 MB File
188 MB File
59.7 MB File
104 MB File
60.9 MB File
1.5 KB File

Contact the Research Data Service for help interpreting this log.

RelatedMaterial update: {"note"=>[nil, ""], "feature"=>[nil, false]} 2023-12-18T17:18:18Z
RelatedMaterial update: {"note"=>[nil, ""], "feature"=>[nil, false]} 2023-12-18T17:18:18Z
RelatedMaterial update: {"citation"=>["Lindsay Clark. R functions for conversion of genetic data formats.", "Lindsay Clark. R functions for conversion of genetic data formats."], "note"=>[nil, ""], "feature"=>[nil, false]} 2023-12-18T17:18:18Z
RelatedMaterial update: {"citation"=>["Genetic diversity of Miscanthus sinensis. NCBI Sequence Read Archive, Bioproject PRJNA207721", "Genetic diversity of Miscanthus sinensis. NCBI Sequence Read Archive, Bioproject PRJNA207721"], "note"=>[nil, ""], "feature"=>[nil, false]} 2023-12-18T17:18:18Z
RelatedMaterial update: {"note"=>[nil, ""], "feature"=>[nil, false]} 2023-12-18T17:18:18Z
RelatedMaterial create: {"material_type"=>"Dataset", "availability"=>nil, "link"=>"https://doi.org/10.13012/B2IDB-0790815_V3", "uri"=>"10.13012/B2IDB-0790815_V3", "uri_type"=>"DOI", "citation"=>"", "dataset_id"=>362, "selected_type"=>"Dataset", "datacite_list"=>"IsPreviousVersionOf"} 2019-03-18T19:38:47Z
RelatedMaterial update: {"uri"=>["", "hdl.handle.net/2142/49963"], "uri_type"=>["", "Handle"], "datacite_list"=>["", "IsSupplementedBy"]} 2019-03-18T19:38:47Z
RelatedMaterial update: {"uri"=>["", "10.5281/zenodo.846816"], "uri_type"=>["", "DOI"], "datacite_list"=>["", "IsSupplementedBy"]} 2019-03-18T19:38:47Z
RelatedMaterial update: {"uri"=>["", "https://www.ncbi.nlm.nih.gov//bioproject/PRJNA207721"], "uri_type"=>["", "URL"], "datacite_list"=>["", "IsSupplementedBy"]} 2019-03-18T19:38:47Z
RelatedMaterial create: {"material_type"=>"Dataset", "availability"=>nil, "link"=>"https://doi.org/10.13012/B2IDB-0790815_V2", "uri"=>"10.13012/B2IDB-0790815_V2", "uri_type"=>"DOI", "citation"=>"", "dataset_id"=>362, "selected_type"=>"Dataset", "datacite_list"=>"IsPreviousVersionOf"} 2018-12-19T19:51:44Z
RelatedMaterial update: {"uri"=>[nil, ""], "uri_type"=>[nil, ""], "datacite_list"=>[nil, ""]} 2018-02-27T20:59:15Z
RelatedMaterial update: {"uri"=>[nil, ""], "uri_type"=>[nil, ""], "datacite_list"=>[nil, ""]} 2018-02-27T20:59:15Z
RelatedMaterial update: {"uri"=>[nil, ""], "uri_type"=>[nil, ""], "datacite_list"=>[nil, ""]} 2018-02-27T20:59:15Z
Dataset update: {"version_comment"=>[nil, ""], "subject"=>[nil, "Life Sciences"]} 2018-02-27T20:59:15Z