Illinois Data Bank

Data from: Genome-wide association and genomic prediction for biomass yield in Miscanthus sinensis phenotyped in Asia and North America

A newer version of this dataset is available. View the latest version.
Cite this dataset:
Clark, Lindsay V.; Dwiyanti, Maria S.; Anzoua, Kossonou G.; Brummer, Joe E.; Głowacka, Katarzyna; Hall, Megan; Heo, Kweon; Jin, Xiaoli; Lipka, Alexander E.; Peng, Junhua; Yamada, Toshihiko; Yoo, Ji Hye; Yu, Chang Yeon; Zhao, Hua; Long, Stephen P.; Sacks, Erik J. (2017): Data from: Genome-wide association and genomic prediction for biomass yield in Miscanthus sinensis phenotyped in Asia and North America. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-0790815_V1

Dataset Description

This dataset contains genotypic and phenotypic data, R scripts, and the results of analysis pertaining to a multi-location field trial of Miscanthus sinensis. Genome-wide association and genomic prediction were performed for biomass yield and 14 yield-component traits across six field trial locations in Asia and North America, using 46,177 single-nucleotide polymorphism (SNP) markers mined from restriction site-associated DNA sequencing (RAD-seq) and 568 M. sinensis accessions. Genomic regions and candidate genes were identified that can be used for breeding improved varieties of M. sinensis, which in turn will be used to generate new M. xgiganteus clones for biomass.

Subject

Life Sciences

Keywords

 miscanthus; genotyping-by-sequencing (GBS); genome-wide association studies (GWAS); genomic selection

License

 CC BY

Funder

 U.S. Department of Energy (DOE)-Grant:DE-SC0006634

Corresponding Creator

 Erik J. Sacks

Downloaded

 3697 times
Version DOI Comment Publication Date
3 10.13012/B2IDB-0790815_V3 One R script was updated and an another was added in response to peer review 2019-03-25
2 10.13012/B2IDB-0790815_V2 Updated files from v1 2018-12-19
1 10.13012/B2IDB-0790815_V1 2017-11-29

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