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Datasets

published: 2020-05-15
 
This data has tweets collected in paper Shubhanshu Mishra, Sneha Agarwal, Jinlong Guo, Kirstin Phelps, Johna Picco, and Jana Diesner. 2014. Enthusiasm and support: alternative sentiment classification for social movements on social media. In Proceedings of the 2014 ACM conference on Web science (WebSci '14). ACM, New York, NY, USA, 261-262. DOI: https://doi.org/10.1145/2615569.2615667 The data only contains tweet IDs and the corresponding enthusiasm and support labels by two different annotators.
keywords: Twitter; text classification; enthusiasm; support; social causes; LGBT; Cyberbullying; NFL
published: 2020-05-13
 
Terrorism is among the most pressing challenges to democratic governance around the world. The Responsible Terrorism Coverage (or ResTeCo) project aims to address a fundamental dilemma facing 21st century societies: how to give citizens the information they need without giving terrorists the kind of attention they want. The ResTeCo hopes to inform best practices by using extreme-scale text analytic methods to extract information from more than 70 years of terrorism-related media coverage from around the world and across 5 languages. Our goal is to expand the available data on media responses to terrorism and enable the development of empirically-validated models for socially responsible, effective news organizations. This particular dataset contains information extracted from terrorism-related stories in the New York Times published between 1945 and 2018. It includes variables that measure the relative share of terrorism-related topics, the valence and intensity of emotional language, as well as the people, places, and organizations mentioned. This dataset contains 3 files: 1. <i>"ResTeCo Project NYT Dataset Variable Descriptions.pdf"</i> <ul> <li>A detailed codebook containing a summary of the Responsible Terrorism Coverage (ResTeCo) Project New York Times (NYT) Dataset and descriptions of all variables. </li> </ul> 2. <i>"resteco-nyt.csv"</i> <ul><li>This file contains the data extracted from terrorism-related media coverage in the New York Times between 1945 and 2018. It includes variables that measure the relative share of topics, sentiment, and emotion present in this coverage. There are also variables that contain metadata and list the people, places, and organizations mentioned in these articles. There are 53 variables and 438,373 observations. The variable "id" uniquely identifies each observation. Each observation represents a single news article. </li> <li> <b>Please note</b> that care should be taken when using "respect-nyt.csv". The file may not be suitable to use in a spreadsheet program like Excel as some of the values get to be quite large. Excel cannot handle some of these large values, which may cause the data to appear corrupted within the software. It is encouraged that a user of this data use a statistical package such as Stata, R, or Python to ensure the structure and quality of the data remains preserved.</li> </ul> 3. <i>"README.md"</i> <ul><li>This file contains useful information for the user about the dataset. It is a text file written in mark down language</li> </ul> <b>Citation Guidelines</b> 1) To cite this codebook please use the following citation: Althaus, Scott, Joseph Bajjalieh, Marc Jungblut, Dan Shalmon, Subhankar Ghosh, and Pradnyesh Joshi. 2020. Responsible Terrorism Coverage (ResTeCo) Project New York Times (NYT) Dataset Variable Descriptions. Responsible Terrorism Coverage (ResTeCo) Project New York Times Dataset. Cline Center for Advanced Social Research. May 13. University of Illinois Urbana-Champaign. doi: 10.13012/B2IDB-4638196_V1 2) To cite the data please use the following citation: Althaus, Scott, Joseph Bajjalieh, Marc Jungblut, Dan Shalmon, Subhankar Ghosh, and Pradnyesh Joshi. 2020. Responsible Terrorism Coverage (ResTeCo) Project New York Times Dataset. Cline Center for Advanced Social Research. May 13. University of Illinois Urbana-Champaign. doi: 10.13012/B2IDB-4638196_V1
keywords: Terrorism, Text Analytics, News Coverage, Topic Modeling, Sentiment Analysis
published: 2020-04-02
 
Automatic and manual counts of black flies captured in Illinois.
keywords: black flies; simuliids; ImageJ; count method
published: 2020-04-22
 
Nest survival and Fledgling production data for Bell's Vireo and Willow Flycatcher nests.
keywords: Bell's Vireo;Willow Flycatcher;habitat selection;fitness;
published: 2020-04-06
 
Raw measurement data for umbilical remnants (umbilical vein, umbilical arteries and urachus) in support of Equine Veterinary Journal publication "Normal Regression of the Internal Umbilical Remnant Structures in Standardbred Foals."
keywords: equine; umbilicus; ultrasound
published: 2020-03-14
 
Data on bank elevations determined from lidar data for the Upper Sangamon River, Illinois, the Mission River, Texas, and the White River in Indiana
keywords: bank elevations, rivers, meandering, lowland
published: 2020-03-08
 
This dataset inventories the availability of entrepreneurship and small business education, including co-curricular opportunities, in two-year colleges in the United States. The inventory provides a snapshot of activities at more than 1,650 public, not-for-profit, and private for-profit institutions, in 2014.
keywords: Small business education; entrepreneurship education; Kauffman Entrepreneurship Education Inventory; Ewing Marion Kauffman Foundation; Paul J. Magelli
published: 2020-06-01
 
Dataset associated with Hoover et al AUK-19-093 submission: Local conspecific density does not influence reproductive output in a secondary cavity-nesting songbird. Excel CSV with all of the data used in analyses. Description of variables YEARS: year ORDINAL_DATE: number for what day of the year it is with 1 January = 1,……30 December = 365 SITE: acronym for each study site BOX: unique nest box identifier on each study site TREAT: designates whether nest box was in a high- or low- nest box density area within each study site ACTUAL_NO_NEIGHBORS: number of pairs of warblers using a nest box within 200 m of a given pair’s nest box CLUTCH_SIZE: number of warbler eggs in nest at the onset of incubation PROWN: number of warbler nestlings once eggs have hatched PROWF: number of warbler nestlings that fledged out of the nest box HATCH_SUCCESS: proportion of eggs in the nest that hatched FLEDG_SUCCESS: proportion of the nestlings that fledged from the nest box HATCH_SUCCESS2: binary category where “0” indicates there was some, and “1” indicates there was no hatching failure FLEDG_SUCCESS2: binary category where “0” indicates there was some, and “1” indicates there was no nestling failure (i.e. nestling death) BHCO_PARASIT2: binary category where “0” indicates no cowbird parasitism, and “1” indicates there was cowbird parasitism BHCOE: number of cowbird eggs in clutch BHCOF: number of cowbird nestlings that fledged from the nest PAIRID: unique number that identifies a male and female warbler that are together at a nest box and this number is the same in a subsequent nesting attempt or year if the same male and female are together again FEMALE_ID: unique identifier for each female which represents her leg band combination. Each letter represents a band with letters preceding the hyphen being on the right leg and after the hyphen the left leg FEM_AGE: binary category where “0” indicates a 1-year-old bird and “1” indicates a >1-year-old bird FEMALE_BREEDING_ATTEMPT: “1” indicates first, “2” indicates second,……..breeding attempt within a given year SECOND_ATTEMPT: for any female that fledged a brood in a given year, binary category where “0” represents that they did not, and “1” indicates that they did attempt a second brood that year F_TOT_PROWF: total reproductive output (number of warbler fledglings produced) for a given female in a given year MALE_ID: unique identifier for each male which represents his leg band combination. Each letter represents a band with letters preceding the hyphen being on the right leg and after the hyphen the left leg MALE_AGE2: binary category where “0” indicates a 1-year-old bird and “1” indicates a >1-year-old bird Provisioning_rate: total number of food provisions per nestling per hour by male and female warbler combined BROOD_MASS: average nestling mass (g) for the brood BROOD_TARSUS: average nestling tarsus length (mm) for the brood Brood_condition: unit-less index of nestling condition that uses the residuals of the BROOD_MASS/BROOD_TARSUS relationship A period (“.”) represents where data were not collected, not available, or because individual nest or female did not qualify for consideration of a category assignment. An empty cell represents no data available for this particular cell.
keywords: conspecific density; density dependence; food limitation; hatching success; nestling body condition; nestling provisioning; Prothonotary Warbler; reproductive output
published: 2020-02-27
 
These data were collected for an experiment examining effects of neonicotinoid (clothianidin) presence on hover fly (Diptera: Syrphidae) behavior. Hover flies of two species (Eristalis arbustorum and Toxomerus marginatus) were offered a choice to feed on artificial flowers laced with sucrose solution that was either contaminated (CLO) or not contaminated (CON) with clothianidin. Two different concentrations of clothianidin in 0.5 M sucrose solution were tested: 2.5 ppb and 150 ppb. We conducted four sets of 10 trials, each trial set examining a different combination of species and clothianidin dose. Across 6 hours of video for each trial we recorded 1) number of visits to each flower that resulted in feeding, and 2) amount of time spent feeding during each visit. We found that while neither species fed significantly longer on either of the solutions, E. arbustorum appeared to avoid flowers with clothianidin particularly at high rates. In the paper, we attribute this avoidance response, partially, to hover fly-visible spectral differences between the two flower choices and discuss potential implications for field and lab-based studies. In the enclosed zip file we have included all data for this project and code scripts from R. * Note: Data folder contains 4 files (instead of 6 as mentioned in Readme): e.tenax_photoreceptors.csv; hoverfly_data_UPDATE.csv; number_visits_UPDATE.csv; and Original 2018 hover fly choice test data_Clem2020.xlsx
keywords: Syrphidae; hoverfly; Eristalis; Toxomerus; Choice Experiment; Neonicotinoid; Clothianidin
published: 2020-02-23
 
Citation context annotation for papers citing retracted paper Matsuyama 2005 (RETRACTED: Matsuyama W, Mitsuyama H, Watanabe M, Oonakahara KI, Higashimoto I, Osame M, Arimura K. Effects of omega-3 polyunsaturated fatty acids on inflammatory markers in COPD. Chest. 2005 Dec 1;128(6):3817-27.), retracted in 2008 (Retraction in: Chest (2008) 134:4 (893) <a href="https://doi.org/10.1016/S0012-3692(08)60339-6">https://doi.org/10.1016/S0012-3692(08)60339-6<a/> ). This is part of the supplemental data for Jodi Schneider, Di Ye, Alison Hill, and Ashley Whitehorn. "Continued Citation of a Fraudulent Clinical Trial Report, Eleven Years after it was retracted for Falsifying Data" [R&R under review with Scientometrics]. Overall we found 148 citations to the retracted paper from 2006 to 2019, However, this dataset does not include the annotations described in the 2015. in Ashley Fulton, Alison Coates, Marie Williams, Peter Howe, and Alison Hill. "Persistent citation of the only published randomized controlled trial of omega-3 supplementation in chronic obstructive pulmonary disease six years after its retraction." Publications 3, no. 1 (2015): 17-26. In this dataset 70 new and newly found citations are listed: 66 annotated citations and 4 pending citations (non-annotated since we don't have full-text). "New citations" refer to articles published from March 25, 2014 to 2019, found in Google Scholar and Web of Science. "Newly found citations" refer articles published 2006-2013, found in Google Scholar and Web of Science, but not previously covered in Ashley Fulton, Alison Coates, Marie Williams, Peter Howe, and Alison Hill. "Persistent citation of the only published randomised controlled trial of omega-3 supplementation in chronic obstructive pulmonary disease six years after its retraction." Publications 3, no. 1 (2015): 17-26. NOTES: This is Unicode data. Some publication titles & quotes are in non-Latin characters and they may contain commas, quotation marks, etc. FILES/FILE FORMATS Same data in two formats: 2006-2019-new-citation-contexts-to-Matsuyama.csv - Unicode CSV (preservation format only) 2006-2019-new-citation-contexts-to-Matsuyama.xlsx - Excel workbook (preferred format) ROW EXPLANATIONS 70 rows of data - one citing publication per row COLUMN HEADER EXPLANATIONS Note - processing notes Annotation pending - Y or blank Year Published - publication year ID - ID corresponding to the network analysis. See Ye, Di; Schneider, Jodi (2019): Network of First and Second-generation citations to Matsuyama 2005 from Google Scholar and Web of Science. University of Illinois at Urbana-Champaign. <a href="https://doi.org/10.13012/B2IDB-1403534_V2">https://doi.org/10.13012/B2IDB-1403534_V2</a> Title - item title (some have non-Latin characters, commas, etc.) Official Translated Title - item title in English, as listed in the publication Machine Translated Title - item title in English, translated by Google Scholar Language - publication language Type - publication type (e.g., bachelor's thesis, blog post, book chapter, clinical guidelines, Cochrane Review, consumer-oriented evidence summary, continuing education journal article, journal article, letter to the editor, magazine article, Master's thesis, patent, Ph.D. thesis, textbook chapter, training module) Book title for book chapters - Only for a book chapter - the book title University for theses - for bachelor's thesis, Master's thesis, Ph.D. thesis - the associated university Pre/Post Retraction - "Pre" for 2006-2008 (means published before the October 2008 retraction notice or in the 2 months afterwards); "Post" for 2009-2019 (considered post-retraction for our analysis) Identifier where relevant - ISBN, Patent ID, PMID (only for items we considered hard to find/identify, e.g. those without a DOI-based URL) URL where available - URL, ideally a DOI-based URL Reference number/style - reference Only in bibliography - Y or blank Acknowledged - If annotated, Y, Not relevant as retraction not published yet, or N (blank otherwise) Positive / "Poor Research" (Negative) - P for positive, N for negative if annotated; blank otherwise Human translated quotations - Y or blank; blank means Google scholar was used to translate quotations for Translated Quotation X Specific/in passing (overall) - Specific if any of the 5 quotations are specific [aggregates Specific / In Passing (Quotation X)] Quotation 1 - First quotation (or blank) (includes non-Latin characters in some cases) Translated Quotation 1 - English translation of "Quotation 1" (or blank) Specific / In Passing (Quotation 1) - Specific if "Quotation 1" refers to methods or results of the Matsuyama paper (or blank) What is referenced from Matsuyama (Quotation 1) - Methods; Results; or Methods and Results - blank if "Quotation 1" not specific, no associated quotation, or not yet annotated Quotation 2 - Second quotation (includes non-Latin characters in some cases) Translated Quotation 2 - English translation of "Quotation 2" Specific / In Passing (Quotation 2) - Specific if "Quotation 2" refers to methods or results of the Matsuyama paper (or blank) What is referenced from Matsuyama (Quotation 2) - Methods; Results; or Methods and Results - blank if "Quotation 2" not specific, no associated quotation, or not yet annotated Quotation 3 - Third quotation (includes non-Latin characters in some cases) Translated Quotation 3 - English translation of "Quotation 3" Specific / In Passing (Quotation 3) - Specific if "Quotation 3" refers to methods or results of the Matsuyama paper (or blank) What is referenced from Matsuyama (Quotation 3) - Methods; Results; or Methods and Results - blank if "Quotation 3" not specific, no associated quotation, or not yet annotated Quotation 4 - Fourth quotation (includes non-Latin characters in some cases) Translated Quotation 4 - English translation of "Quotation 4" Specific / In Passing (Quotation 4) - Specific if "Quotation 4" refers to methods or results of the Matsuyama paper (or blank) What is referenced from Matsuyama (Quotation 4) - Methods; Results; or Methods and Results - blank if "Quotation 4" not specific, no associated quotation, or not yet annotated Quotation 5 - Fifth quotation (includes non-Latin characters in some cases) Translated Quotation 5 - English translation of "Quotation 5" Specific / In Passing (Quotation 5) - Specific if "Quotation 5" refers to methods or results of the Matsuyama paper (or blank) What is referenced from Matsuyama (Quotation 5) - Methods; Results; or Methods and Results - blank if "Quotation 5" not specific, no associated quotation, or not yet annotated Further Notes - additional notes
keywords: citation context annotation, retraction, diffusion of retraction
published: 2020-02-01
 
This data describes habitat use, availability, landscape level influences, and daily movement of dabbling ducks in the Wabash River Valley of southeastern Illinois and southwestern Indiana. It contains triangulated locations of individual ducks, associated habitat assignments of those locations, flood survey data to determine water availability, and randomly generated points to assess landscape level questions.
keywords: waterfowl; ducks; dabbling; mallard; teal; habitat
published: 2020-01-28
 
This dataset includes two data files that provide the time series (Jul. - Sep. 2017) data of sun-induced chlorophyll fluorescence (SIF_760) collected under sunny conditions at two maize sites (one rainfed and the other irrigated) in Nebraska in 2017. Data contain 392 SIF_760 records at the rainfed site and 707 records at the irrigated site. The timestamp uses local standard time. Data are available for the sunny conditions from 8 am to 5 pm (corresponding to 9 am to 6 pm local time) throughout the study period.
keywords: sun-induced chlorophyll fluorescence (SIF); maize; gross primary production(GPP); light use efficiency(LUE); SIF yield
published: 2020-01-27
 
Morphologic data of dunes in the World's big rivers. Morphologic descriptors for large dunes include: dune height, dune mean leeside angle, dune maximum leeside angle, dune wavelength, dune flow depth (at the crest), and the fractional height of the maximum slope on the leeside for each dune. Morphologic descriptors for small dunes include: dune height, dune mean leeside angle, dune maximum leeside angle, dune wavelength, and dune flow depth (at the crest).
keywords: dune; bedform; rivers; morphology;
published: 2019-12-22
 
Dataset providing calculation of a Competition Index (CI) for Late Pleistocene carnivore guilds in Laos and Vietnam and their relationship to humans. Prey mass spectra, Prey focus masses, and prey class raw data can be used to calculate the CI following Hemmer (2004). Mass estimates were calculated for each species following Van Valkenburgh (1990). Full citations to methodological papers are included as relationships with other resources
keywords: competition; Southeast Asia; carnivores; humans
published: 2019-12-17
 
This dataset provides the raw data, code and related figures for the paper, "Channel Activation of CHSH Nonlocality"
keywords: Super-activation; Non-locality breaking channel
published: 2019-10-16
 
Human annotations of randomly selected judged documents from the AP 88-89, Robust 2004, WT10g, and GOV2 TREC collections. Seven annotators were asked to read documents in their entirety and then select up to ten terms they felt best represented the main topic(s) of the document. Terms were chosen from among a set sampled from the document in question and from related documents.
keywords: TREC; information retrieval; document topicality; document description
published: 2019-11-12
 
We are sharing the tweet IDs of four social movements: #BlackLivesMatter, #WhiteLivesMatter, #AllLivesMatter, and #BlueLivesMatter movements. The tweets are collected between May 1st, 2015 and May 30, 2017. We eliminated the location to the United States and focused on extracting the original tweets, excluding the retweets. Recommended citations for the data: Rezapour, R. (2019). Data for: How do Moral Values Differ in Tweets on Social Movements?. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-9614170_V1 and Rezapour, R., Ferronato, P., and Diesner, J. (2019). How do moral values differ in tweets on social movements?. In 2019 Computer Supported Cooperative Work and Social Computing Companion Publication (CSCW’19 Companion), Austin, TX.
keywords: Twitter; social movements; black lives matter; blue lives matter; all lives matter; white lives matter
published: 2019-10-18
 
Supporting secondary data used in a manuscript currently in submission regarding the invasion dynamics of the asian tiger mosquito, Aedes albopictus, in the state of Illinois
keywords: albopictus;mosquito
published: 2019-07-04
 
Software (Matlab .m files) for the article: Lying in Wait: Modeling the Control of Bacterial Infections via Antibiotic-Induced Proviruses. The files can be used to reproduce the analysis and figures in the article.
keywords: Matlab codes; antibiotic-induced dynamics
published: 2019-09-05
 
The data set here include data from NMR, LC-MS/MS, MALDI-MS, H/D exchange MS experiments used in paper "A novel rotifer derived alkaloid paralyzes schistosome larvae and prevents infection".
published: 2019-09-06
 
This is a dataset of 1101 comments from The New York Times (May 1, 2015-August 31, 2015) that contains a mention of the stemmed words vaccine or vaxx.
keywords: vaccine;online comments
published: 2019-08-15
 
Simulation data related to the paper "Mastitis risk effect on the economic consequences of paratuberculosis control in dairy cattle: A stochastic modeling study"
keywords: paratuberculosis;simulation;dairy
published: 2019-07-27
 
Genotype calls are provided for a collection of 583 Miscanthus sinensis clones across 1,108,836 loci mapped to version 7 of the Miscanthus sinensis reference genome. Sequence and alignment information for all unique RAD tags is also provided to facilitate cross-referencing to other genomes.
keywords: variant call format (VCF); sequence alignment/map format (SAM); miscanthus; single nucleotide polymorphism (SNP); restriction site-associated DNA sequencing (RAD-seq); bioenergy; grass
published: 2019-07-26
 
Data used in paper published in the Journal of Applied Ecology titled " Bee diversity in tallgrass prairies affected by management and its effects on above- and below-ground resources" Bee Community file contains info on bees sampled in each site. The first column contain the Tallgrass Prairie Sites sampled all additional columns contain the bee species name in the first row and all individuals recorded. Plant Community file contains info on plants sampled in each site. The first column contain the Tallgrass Prairie Sites sampled all additional columns contain the plant species name in the first row and all individuals recorded. Soil PC1 file contains the soil PC1 values used in the analyses. The first column contain the Tallgrass Prairie Sites sampled, the second column contains the calculated soil PC1 values.
keywords: bee; community; tallgrass prairie; grazing
published: 2019-07-08
 
These files contain the data presented in the manuscript entitles "Iron redox reactions can drive microtopographic variation in upland soil carbon dioxide and nitrous oxide emissions".
keywords: Iron; redox; carbon dioxide; nitrous oxide; chemodenitrification; Feammox; dissimilatory iron reduction; upland soils; flooding; global change