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Illinois Data Bank Dataset Search Results
Dataset Search Results
published: 2022-02-14
Allen, Maximilian (2022): PumaCaching. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-5816195_V1
Dataset associated with Allen et al. (In Review): Food caching by a solitary large carnivore supports optimal foraging theory If using thi
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s dataset, please cite this manuscript.
more description
published: 2021-11-16
Prada, Cecilia M.; Turner, Benjamin L.; Dalling, James W. (2021): Seedling traits in oak and mix stands. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-7636863_V1
Data from an a field experiment at El Velo, Chiriqui, Republic of Panama. Data contain information about functional traits of seedlings gro
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wing in different treatments including type of forest, nitrogen addition and organic matter.
more description
keywords:
Mycorrhiza; nitrogen; oak forest; Panama; plant-soil feedbacks, seedling growth
published: 2021-08-04
Sabrina, Sadia; Lewis, Quinn; Rhoads, Bruce (2021): Data on Confluence Hydrodynamics from Large-scale Particle Velocimetry. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-1079505_V1
This dataset contains data derived from large-scale particle velocimetry measurements obtained at the confluence of the Saline Branch and a
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n unnamed tributary in Illinois. The data were collected using two cameras positioned about the confluence, one mounted on a cable and the other mounted on a tripod. A description of the content of the files can be found in Description of Files.rtf.
more description
keywords:
confluence; hydrodynamics; LSPIV; flow structure; stagnation
published: 2020-12-16
Althaus, Scott; Bajjalieh, Joseph; Jungblut, Marc; Shalmon, Dan; Ghosh, Subhankar; Joshi, Pradnyesh (2020): Responsible Terrorism Coverage (ResTeCo) Project Foreign Broadcast Information Service (FBIS) Dataset. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-6360821_V1
Terrorism is among the most pressing challenges to democratic governance around the world. The Responsible Terrorism Coverage (or ResTeCo)
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project aims to address a fundamental dilemma facing 21st century societies: how to give citizens the information they need without giving terrorists the kind of attention they want. The ResTeCo hopes to inform best practices by using extreme-scale text analytic methods to extract information from more than 70 years of terrorism-related media coverage from around the world and across 5 languages. Our goal is to expand the available data on media responses to terrorism and enable the development of empirically-validated models for socially responsible, effective news organizations. This particular dataset contains information extracted from terrorism-related stories in the Foreign Broadcast Information Service (FBIS) published between 1995 and 2013. It includes variables that measure the relative share of terrorism-related topics, the valence and intensity of emotional language, as well as the people, places, and organizations mentioned. This dataset contains 3 files: 1. "ResTeCo Project FBIS Dataset Variable Descriptions.pdf" A detailed codebook containing a summary of the Responsible Terrorism Coverage (ResTeCo) Project Foreign Broadcast Information Service (FBIS) Dataset and descriptions of all variables. 2. "resteco-fbis.csv" This file contains the data extracted from terrorism-related media coverage in the Foreign Broadcast Information Service (FBIS) between 1995 and 2013. It includes variables that measure the relative share of topics, sentiment, and emotion present in this coverage. There are also variables that contain metadata and list the people, places, and organizations mentioned in these articles. There are 53 variables and 750,971 observations. The variable "id" uniquely identifies each observation. Each observation represents a single news article. Please note that care should be taken when using "resteco-fbis.csv". The file may not be suitable to use in a spreadsheet program like Excel as some of the values get to be quite large. Excel cannot handle some of these large values, which may cause the data to appear corrupted within the software. It is encouraged that a user of this data use a statistical package such as Stata, R, or Python to ensure the structure and quality of the data remains preserved. 3. "README.md" This file contains useful information for the user about the dataset. It is a text file written in mark down language Citation Guidelines 1) To cite this codebook please use the following citation: Althaus, Scott, Joseph Bajjalieh, Marc Jungblut, Dan Shalmon, Subhankar Ghosh, and Pradnyesh Joshi. 2020. Responsible Terrorism Coverage (ResTeCo) Project Foreign Broadcast Information Service (FBIS) Dataset Variable Descriptions. Responsible Terrorism Coverage (ResTeCo) Project Foreign Broadcast Information Service (FBIS) Dataset. Cline Center for Advanced Social Research. December 16. University of Illinois Urbana-Champaign. doi: https://doi.org/10.13012/B2IDB-6360821_V1 2) To cite the data please use the following citation: Althaus, Scott, Joseph Bajjalieh, Marc Jungblut, Dan Shalmon, Subhankar Ghosh, and Pradnyesh Joshi. 2020. Responsible Terrorism Coverage (ResTeCo) Project Foreign Broadcast Information Service (FBIS) Dataset. Cline Center for Advanced Social Research. December 16. University of Illinois Urbana-Champaign. doi: https://doi.org/10.13012/B2IDB-6360821_V1
more description
keywords:
Terrorism, Text Analytics, News Coverage, Topic Modeling, Sentiment Analysis
published: 2021-04-05
Uelmen, Johnny (2021): Data for Dynamics of data availability in disease modeling: An example evaluating the trade-offs of ultra-fine-scale factors to human West Nile virus disease models in the Chicago area, USA. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-5901636_V1
West Nile virus data, aggregated by 55 1-km hexagons, within the NWMAD jurisdiction Cook County, IL. The data incorporates deidentified hum
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an illness, mosquito infection and abundance, socio-economic data, and other abiotic and biotic predictors by epi-weeks 18-38 for the years 2005-2016.
more description
keywords:
WNV; modeling
published: 2020-12-14
Yim, An-Di (2020): Data for Allometric scaling and growth: evaluation and applications in subadult body mass estimation. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-4644759_V1
Femoral skeletal traits (cross-sectional properties, maximum distal metaphyseal breadth of the femur, and maximum superior/inferior femoral
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head diameter) of 219 Taiwanese subadult individuals (aged 0 to 17) as used in the manuscript "Allometric scaling and growth: evaluation and applications in subadult body mass estimation."
more description
keywords:
femur; cross-sectional geometry; osteometrics; subadult
published: 2020-12-16
Althaus, Scott; Bajjalieh, Joseph; Jungblut, Marc; Shalmon, Dan; Ghosh, Subhankar; Joshi, Pradnyesh (2020): Responsible Terrorism Coverage (ResTeCo) Project BBC Summary of World Broadcasts (SWB) Dataset. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-2128492_V1
Terrorism is among the most pressing challenges to democratic governance around the world. The Responsible Terrorism Coverage (or ResTeCo)
...
project aims to address a fundamental dilemma facing 21st century societies: how to give citizens the information they need without giving terrorists the kind of attention they want. The ResTeCo hopes to inform best practices by using extreme-scale text analytic methods to extract information from more than 70 years of terrorism-related media coverage from around the world and across 5 languages. Our goal is to expand the available data on media responses to terrorism and enable the development of empirically-validated models for socially responsible, effective news organizations. This particular dataset contains information extracted from terrorism-related stories in the Summary of World Broadcasts published between 1979 and 2019. It includes variables that measure the relative share of terrorism-related topics, the valence and intensity of emotional language, as well as the people, places, and organizations mentioned. This dataset contains 3 files: 1. "ResTeCo Project SWB Dataset Variable Descriptions.pdf" A detailed codebook containing a summary of the Responsible Terrorism Coverage (ResTeCo) Project BBC Summary of World Broadcasts (SWB) Dataset and descriptions of all variables. 2. "resteco-swb.csv" This file contains the data extracted from terrorism-related media coverage in the BBC Summary of World Broadcasts (SWB) between 1979 and 2019. It includes variables that measure the relative share of topics, sentiment, and emotion present in this coverage. There are also variables that contain metadata and list the people, places, and organizations mentioned in these articles. There are 53 variables and 438,373 observations. The variable "id" uniquely identifies each observation. Each observation represents a single news article. Please note that care should be taken when using "resteco-swb.csv". The file may not be suitable to use in a spreadsheet program like Excel as some of the values get to be quite large. Excel cannot handle some of these large values, which may cause the data to appear corrupted within the software. It is encouraged that a user of this data use a statistical package such as Stata, R, or Python to ensure the structure and quality of the data remains preserved. 3. "README.md" This file contains useful information for the user about the dataset. It is a text file written in markdown language Citation Guidelines 1) To cite this codebook please use the following citation: Althaus, Scott, Joseph Bajjalieh, Marc Jungblut, Dan Shalmon, Subhankar Ghosh, and Pradnyesh Joshi. 2020. Responsible Terrorism Coverage (ResTeCo) Project BBC Summary of World Broadcasts (SWB) Dataset Variable Descriptions. Responsible Terrorism Coverage (ResTeCo) Project BBC Summary of World Broadcasts (SWB) Dataset. Cline Center for Advanced Social Research. December 16. University of Illinois Urbana-Champaign. doi: https://doi.org/10.13012/B2IDB-2128492_V1 2) To cite the data please use the following citation: Althaus, Scott, Joseph Bajjalieh, Marc Jungblut, Dan Shalmon, Subhankar Ghosh, and Pradnyesh Joshi. 2020. Responsible Terrorism Coverage (ResTeCo) Project Summary of World Broadcasts (SWB) Dataset. Cline Center for Advanced Social Research. December 16. University of Illinois Urbana-Champaign. doi: https://doi.org/10.13012/B2IDB-2128492_V1
more description
keywords:
Terrorism, Text Analytics, News Coverage, Topic Modeling, Sentiment Analysis
published: 2021-03-05
Adey, Amaryllis; Larson, Eric (2021): Crayfish behavior and isotope data from six Wisconsin lakes in summer 2018. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-8355786_V1
Adey_Larson_Behavior.csv: Results of behavioral assays for rusty crayfish Faxonius rusticus collected from six lakes in Vilas County, Wisco
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nsin in summer 2018. Crayfish_ID is an individual crayfish ID or identifier that matches to individuals in Adey_Larson_Isotope. Collection is how organisms were collected (trapped = baited trapping, snorkel = by hand). Lake is the study lake crayfish were collected from. Length is crayfish carapace length in mm. CPUE is crayfish catch-per-unit effort from baited trapping in that lake during summer 2018. Shelter_Occupancy, Exploration, Feeding_Snail, Feeding_Detritus, Feeding_Crayfish, and Aggressiveness are behavioral assay scores for individual crayfish. Shelter_Occupancy is frequency of observation intervals (12 maximum) in which crayfish were observed in shelter over a 12 hour period. Exploration is time for crayfish to explore a new area measured in seconds (maximum possible time 1200 seconds or 20 minutes). Feeding_Snail, Feeding_Detritus, and Feeding_Crayfish is the time for crayfish to take a food item (snail, detritus, or snail in the presence of another crayfish) measured in seconds (maximum possibe time 1200 seconds or 20 minutes). Aggressiveness is the response to an approach with a novel object scored as a fast retreat (-2), slow retreat (-1), no visible response (0), approach without threat display (1), approach with threat display (2), interaction with closed chelae (3), or interaction with open chelae (4). Three repeated aggressiveness measures were made per individual (Aggresiveness1, Aggresiveness2, Aggresiveness3), which were summed for inclusion in subsequent analyses (Aggresiveness_Sum). More detailed behavioral assay methods can be found in Adey 2019 Masters thesis. Adey_Larson_Isotope.csv: Stable isotope (13C, 15N) values for rusty crayfish Faxonius rusticus and snail or mussel primary consumers from six lakes in Vilas County, Wisconsin collected during summer 2018. Crayf is an individual crayfish ID or identifier that matches to the same individual crayfish in Adey_Larson_Behavior. Lake is the study lake. Collection is how organisms were collected (trapped = baited trapping, snorkel = by hand). Sample type indicates whether isotope values are for crayfish, snail, or mussel. d13C and d15N are stable isotope values.
more description
keywords:
individual specialization; intraspecific competition; behavior; diet; stable isotopes; crayfish; invasive species; limnology; Faxonius rusticus
published: 2021-02-16
Shan, Jun; Sanford, Robert; Chee-Sanford, Joanne; Ooi, Sean; Löffler, Frank; Konstantinidis, Konstantinos; Yang, Wendy (2021): Census data for "Beyond denitrification: the role of microbial diversity in controlling nitrous oxide reduction and soil nitrous oxide emissions" . University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-5788371_V1
Data from census of peer-reviewed papers discussing nosZ and published from 2013 to 2019. These data were reported in the manuscript titled
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, "Beyond denitrification: the role of microbial diversity in controlling nitrous oxide reduction and soil nitrous oxide emissions" published in Global Change Biology as an Invited Report.
more description
keywords:
atypical nosZ; Clade II nosZ; denitrification; nitrous oxide; N2O reduction; non-denitrifier; nosZ; nosZ-II; nosZ Clade II; soil N2O emissions
published: 2021-02-15
Klimas, Samuel; Osborn, Joshua; Lancaster, Joseph; Jacques, Chris; Yetter, Aaron; Hagy, Heath (2021): Food selection by spring-migrating green-winged teal 2016-2018. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-1751983_V1
The file contains biomass and count data of food items encountered in the digestive tract of collected green-winged teal from the Illinois
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River Valley during spring 2016-2018. The file also contains biomass of food items collected from core samples collected at sites where the green-winged teal were collected. Together, the consumed and availability food data are used to calculate diet selection. The data also contains information on the teal, collection, sites, and other covariates used in analysis. Lastly, the dataset contains biomass of food items collected in medium (#35) and small (#60) sieves for 2018 core samples.
more description
keywords:
Anas crecca; food selection; green-winged teal; Illinois River Valley; moist-soil plants; spring migration; stopover ecology
published: 2020-10-01
Fraterrigo, Jennifer; Rembelski, Mara (2020): Fire and drought effects on soils invaded by Microstegium vimineum in southern Illinois. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-0742378_V1
We measured the effects of fire or drought treatment on plant, microbial and biogeochemical responses in temperate deciduous forests invade
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d by the annual grass Microstegium vimineum with a history of either frequent fire or fire exclusion. Please note, on Documentation tab / Experimental or Sampling Design, “15 (XVI)” should be “16 (XVI)”.
more description
keywords:
plant-soil interaction; grass-fire cycle; Microstegium; carbon and nitrogen cycling; microbial decomposers
published: 2021-01-25
Zenzal, T. J. ; Ward, Michael; Diehl, Rob; Buler, Jeffrey; Smolinsky, Jaclyn; Deppe, Jill; Bolus, Rachel; Celis-Murillo, Antonio; Moore, Frank (2021): Data from Retreat, detour, or advance? Understanding the movements of birds confronting the Gulf of Mexico. . University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-7778154_V1
Dataset associated with Zenzal et al. Oikos submission: Retreat, detour, or advance? Understanding the movements of birds confronting the G
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ulf of Mexico. https://doi.org/10.1111/oik.07834 Four CSV files were used for analysis and are related to the following subsections under the “Statistics” heading in the “Materials and Methods” section of the journal article: 1. Departing the Edge = “AIC Analysis.csv” 2. Comparing Retreating to Advancing = “Advance and Retreat Analysis.csv” and “Wind Data at Departure.csv” 3. Food Abundance = “Fruit Data.csv” and “Arthropod Data.csv” <b>Description of variables:</b> Year: the year in which data were collected. Departure: the direction in which an individual departed the Bon Secour National Wildlife Refuge. “North” indicates an individual that departed ≥315° or <45°; “Circum” indicates an individual that departed east (45 – 134°) or west ( 225 – 314°); “Trans” indicates an individual that departed south (135 – 224°). Age: the age of an individual at capture. Individuals were aged as hatch year (HY) or after hatch year (AHY) according to Pyle (1997; see related article for full citation). Fat: the fat score of an individual at capture. Individuals were scored on a 6-point scale ranging from 0-5 following Helms and Drury (1960; see related article for full citation). Species: the standardized four letter alphabetic code used as an abbreviation for English common names of North American Birds. SWTH: Catharus ustulatus; REVI: Vireo olivaceus; INBU: Passerina cyanea; WOTH: Hylocichla mustelina; RTHU: Archilochus colubris. FTM_SD: stopover duration or number of days between first capture and departure from automated radio telemetry system coverage at the Bon Secour National Wildlife Refuge. TMB_SD: stopover duration or number of days between first and last detection from automated radio telemetry systems north of Mobile Bay, AL, USA. Mean speed north (km/hr): the northbound travel speed of individuals retreating from the Bon Secour National Wildlife Refuge by determining the time when the signal strength indicated the bird was directly east or west of the automated telemetry system and dividing the amount of time it took for an individual to move in an assumed straight path between the Refuge systems and those north of Mobile Bay, AL, USA. Mean speed south (km/hr): the southbound travel speed of individuals advancing from north of Mobile Bay, AL, USA by determining the time when the signal strength indicated the bird was directly east or west of the automated telemetry system and dividing the amount of time it took for an individual to move in an assumed straight path between the Refuge systems and those north of Mobile Bay, AL, USA. LN_FTM_DEP_TIME: the natural log of departure time from the Bon Secour National Wildlife Refuge. Departure time is defined as the number of hours before or after civil twilight. LN_TMB_DEP_TIME: the natural log of departure time from north of Mobile Bay, AL, USA. Departure time is defined as the number of hours before or after civil twilight. Paired_FTM_DEP_TIME: the departure time or number of hours before or after civil twilight from Bon Secour National Wildlife Refuge. Paired_TMB_DEP_TIME: the departure time or number of hours before or after civil twilight from north of Mobile Bay, AL, USA. Wind Direction: the direction from which the wind originated at the Bon Secour National Wildlife Refuge on nights when individuals were departing. “N” indicates winds from the north (≥315° or <45°); “E” indicates winds from the east (45 – 134°); “W” indicates winds from the west ( 225 – 314°); “S” indicates winds from the south (135 – 224°). Wind Speed (m/s): the wind speed on nights when individuals were departing the Bon Secour National Wildlife Refuge. Group: the direction the bird was traveling under specific wind conditions. Northbound individuals traveled north from Bon Secour National Wildlife Refuge. Southbound individuals traveled south from habitats north of Mobile Bay, AL, USA. Fruit: weekly mean number of ripe fruit per meter. Site: the site from which the data were collected. FTM is located within the Bon Secour National Wildlife Refuge. TMB is located within the Jacinto Port Wildlife Management Area. DOY: number indicating day of year (i.e., 1 January = 001….31 December = 365). Arthropod Biomass: estimated mean arthropod biomass from each sampling period. <b>Note:</b> Empty cells indicate unavailable data where applicable.
more description
keywords:
migratory birds; migration; automated telemetry; Gulf of Mexico
published: 2020-12-03
Lee, Mindy; Applegate, Catherine; Shaffer, Annabelle; Emamaddin, Abrar; Erdman, John; Nakamura, Manabu (2020): A feasibility study to test a novel approach to dietary weight loss with a focus on assisting informed decision making in food selection. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-4710255_V1
This small dataset is a raw data of anthropometric and dietary intake data.
keywords:
Obesity treatment; weight management; high protein; high fiber; nonrestrictive; data visualization; self-empowerment; informed decision making
published: 2020-12-01
Allen, Maximilian (2020): Data for: Vertebrate scavenger guild composition and utilization of carrion in an East Asian temperate forest. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-9720784_V1
This is the data set from the published manuscript 'Vertebrate scavenger guild composition and utilization of carrion in an East Asian temp
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erate forest' by Inagaki et al.
more description
keywords:
Japan;Sika Deer
published: 2020-11-20
Jaikumar, Nikhil; Clemente, Tom; Long, Steve; Ge, Zhengxiang; Changa, Timothy (2020): November_2020_Jaikumar_et_al_IctB_Effects_in_Sorghum. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-8161232_V1
This data set explores the effect of the cyanobacterial gene ictB on photosynthesis in sorghum, under both normal greenhouse growing temper
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atures (32 C / 25 C) and during and after an 8 day chilling stress (10 C / 5 C). IctB is a cyanobacterial gene of unknown function, which was initially thought to be involved in inorganic carbon transport into cells. While ictB is known now not to be an independently active carbon transporter in its own right, it may play a role in passive diffusion of metabolites. This transgene was introduced into sorghum by the lab of Thomas Clemente, through Agrobacterium mediated transformation, alone and in combination with the tomato sedoheptulose-1,7-bisphosphatase (SBPase) gene. Eleven events (six double construct and five single construct ictB) were involved in this study. SBPase was included because some previous experiments in C3 species and some previous modeling work, as well as its position at a metabolic branch point, indicates it plays a role as a control point for photosynthesis. A chilling treatment was included because chilling is one of the most serious ecological factors limiting the range of C4 species. Data includes gene expression, metabolomics (at normal growing temperature), SBPase enzyme activity, biomass and photosynthetic traits at both warm temperature and during and after chilling stress. ----------------- EXPLANATORY NOTES FOR ICTB/SBPASE SORGHUM MANUSCRIPT Data are organized into 10 worksheets, representing an expected 10 tables that will serve a supplementary role in the final publication. These include data on gene expression, metabolomics (at normal growing temperature), SBPase enzyme activity, biomass and photosynthetic traits at both warm temperature and during and after chilling stress. <i><b>Tables are as follows:</i></b> 1. Event_Code: for Table S1. Event codes for events and constructs. Two constructs were generated for this study, and numerous transgenic “events” (i.e. independent transformations) were carried out for each construct. A construct represents the actual vector which was introduced into the plants (complete with promoter, gene of interest, marker gene, etc.) while an event represents a single successful introduction of the transgene. Events are uniquely labeled with letter and number strings but also with a four-digit number for ease of reference, this table explains which event corresponds to each four-digit number. 2. Photosynthetic_Data: for Table S2. Photosynthetic data at greenhouse growing temperature, for ictB single construct, ictB/SBPase double construct, and wild type lines. Five ictB and six ictB/SBPase events were included. Greenhouse growing temperature was approximately 32 °C and 25 °C night. Photosynthetic parameters were measured using a Licor 6400-XT, and included parameters related to carbon dioxide uptake, water loss, and chlorophyll fluorescence. 3. Chilling_Treatment: for Table S3. Photosynthetic response to chilling treatment, for ictB single construct, and wild type lines. Four ictB events were included. Chilling treatment lasted approximately 8 days and began either 3.5 or 5.5 weeks after transplanting the plants (chilling was done in two batches). Chilling treatment involved temperatures of 10 °C day / 7 °C night in growth chambers. Photosynthetic parameters were measured at several time points during and after the chilling treatment, were measured using a Licor 6400-XT, and included parameters related to carbon dioxide uptake, water loss, and chlorophyll fluorescence. 4. SBPase_Activity: for Table S4. SBPase activity in double construct plants. These data measure in vitro substrate-saturated activity of SBPase in desalted extracts from leaf tissues, at 25 °C. Units are micromoles of SBP processed per second per m2 of leaf tissue. Five ictB/SBPase events were included. 5. 2014_gene_exp: for Table S5. Gene expression in 2014 experiment (units of cycle times). These data measure cycle times to threshold, relative to reference genes, for expression of ictB and SBPase. Six ictB single construct events and five ictB/SBPase double construct events were included. Cycle times to threshold relative to reference genes (ΔCT) are inversely related to number of transcripts relative to reference genes, as follows: ΔCT = -log2([NictB]/[Nreference])/[1 + log2b] where b = efficiency of replication. 6. 2016_gene_exp: for Table S5. Gene expression in 2016 experiment (units of cycle times). These data measure cycle times to threshold, relative to reference genes, for expression of ictB and SBPase. Six ictB single construct events and five ictB/SBPase double construct events were included. Cycle times to threshold relative to reference genes (ΔCT) are inversely related to number of transcripts relative to reference genes, as follows: ΔCT = -log2([NictB]/[Nreference])/[1 + log2b] where b = efficiency of replication. 7. Metabolites: for Table S7. Levels of 267 metabolites in leaf tissue. Four ictB single construct events and four ictB/SBPase double construct events were included in these analyses. Metabolites were measured in methanol-extracted samples, either by liquid chromatography / mass spectrometry or by gas chromatography / mass spectrometry, and were compared between events on a relative basis. As quantification was relative to wild type rather than on an absolute basis, no units are included. 8. Metabolite_F_values: for Table S8. F values for effects of ictB, SBPase (in cases where the model was better with a SBPase effect) and event. These analyses are done for each metabolite included in Table S7, and show effects of the explanatory variables ictB, SBPase, and individual event. 9. Biomass_2020: for Table S9. Biomass and grain yield at harvest, for ictB, ictB/SBPase and wild type sorghum plants in spring 2020. Four ictb/SBPase double construct and four ictB single construct events were included. 10. Biomass_2017: for Table S10. Biomass and grain yield at harvest, in chilled and non-chilled sorghum plants containing the ictB transgene (along with wild type controls) in fall 2017. Four ictB single construct events were included. Chilling treatment involved temperatures of 10 °C day / 7 °C night in growth chambers. <i><b>All the variables in the file are explained as below:</i></b> o Type (IctB-SBPase and IctB). This refers to whether a plant is wild type, single construct (contains only the ictB transgene) or double construct (contains both the ictB and SBPase transgenes). o Code: these codes are shorter labels to refer to each transgene event for the sake of convenience. o Alternate_Code: these codes are shorter labels to refer to each transgene event for the sake of convenience. o Event Number: these are unique labels for each transgenic events. o Construct Number: these are labels for each transgenic construct (either the ictB single construct or the ictB/SBPase double construct). o year (i): this refers to the year in which the study was conducted (2014, 2016, 2017, or 2020) o transgene or Transgenic: whether the transgene was present o construct or Type : whether the ictB or the ictB/SBPase construct was present (double, single, wildtype): o temp: leaf temperature during the measurement o A: carbon assimilation rate, in μmol m-2 s-1 o gs: stomatal conductance, in mol m-2 s-1 o CI: intercellular carbon dioxide concentration, in parts per million or μL L-1 o fvfm:FV’/FM’ (maximal potential photosystem II quantum yield under light adapted conditions), dimensionless ratio o phipsill: ΦPSII (maximal potential photosystem II quantum yield under light adapted conditions), dimensionless ratio o qP: photochemical quenching, i.e. ratio of ΦPSII to FV’/FM’ , dimensionless ratio o iwue: intrinsic water use efficiency, i.e. ratio of carbon assimilation rate to stomatal conductance, in units of μmol mol-1 o event: individual transgenic / transformation event o Vmax: substrate-saturated in vitro activity of the SBPase enzyme, in μmol m-2 s-1 o ID: identification number of sample o ΔCT1: difference in cycle times to threshold during gene expression (quantitative PCR) assay, between ictB and the reference gene GAPDH, in units of cycles o ΔCT2: cycle times to threshold during gene expression (quantitative PCR) assay, between SBPase and the reference gene GAPDH, in units of cycles o GAPDH: cycle times to threshold for the reference gene GAPDH (glyceraldehyde phosphate dehydrogenase) o IctB: cycle times to threshold for the gene of interest ictB o SBPase: cycle times to threshold for the gene of interest SBPase o v1 to v267 represent individual metabolite (see the heading immediately above the labels v1, v2, etc.). Variables v268-v272 refer to total (summed) metabolite levels for particular pathways of interest. o leaf: Leaf and stem dry biomass (in grams) o seed: Seedhead dry biomass (in grams) o biomass: Total (leaf, stem + seed head) dry biomass (in grams) o harvind: ratio of seed head dry biomass to total dry biomass o treatment (chilled and nonchilled): “Chilled” plants were grown under warm greenhouse conditions (32 °C day / 25 °C night) for 6 or 8 weeks, then switched to chilling temperatures under growth chamber conditions (10 °C / 7 °C night) for 8 days, and were then returned to greenhouse growing conditions. -----------------
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keywords:
ictB; SBPase; photosynthesis; sorghum; chilling
published: 2020-11-18
Gardner, Allison; Allan, Brian (2020): Gardner Midwest Lyme Invasion Data 2020-11-18. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-6050723_V2
These data obtained from the peer-reviewed literature and a public database depict the geographic expansion of the black-legged tick (Ixode
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s scapularis) and human cases of Lyme disease in the midwestern U.S. <b><i>Note</b></i>: There was an omission from the first version (V1) of the data set that required us to update the data. Specifically, we failed to include the data from the article "Caporale DA, Johnson CM, Millard BJ. 2005 Presence of Borrelia burgdorferi (Spirochaetales: Spirochaetaceae) in Southern Kettle Moraine State Forest, Wisconsin, and characterization of strain W97F51. J. Med. Entomol. 42, 457–472". In the second version (V2) of the data, this omission is corrected.
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keywords:
Lyme disease; Borrelia burgdorferi; Ixodes scapularis; black-legged tick
published: 2020-11-14
Hoover, Jeffrey; Schelsky, Wendy (2020): Global warming effects on nesting in Prothonotary Warblers. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-6482573_V1
Dataset includes temperature data (local average April daily temperatures), first egg dates and reproductive output of Prothonotary Warbler
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s breeding in southernmost Illinois, USA. Also included are arrival dates for warblers returning to breeding grounds from wintering grounds, and global temperature anomaly data for comparison with local temperatures. These data were used in the manuscript entitled "Warmer April Temperatures on Breeding Grounds Promote Earlier Nesting in a Long-Distance Migratory Bird, the Prothonotary Warbler" published in Frontiers in Ecology and Evolution. A rich text file is included with explanations of each variable in the dataset.
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keywords:
first egg dates; global warming; local temperature effects; long-distance migratory bird; prothonotary warbler; protonotaria citrea; reproductive output
published: 2020-08-31
Chen, Luoye; Khanna, Madhu; Debnath, Deepayan; Zhong, Jia; Ferin, Kelsie; VanLoocke, Andy (2020): BEPAM Model Code and CABBI Simulation Results for "The Economic and Environmental Costs and Benefits of the Renewable Fuel Standard". University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-9851670_V1
This dataset contains BEPAM model code and input data to replicate the outcomes for "The Economic and Environmental Costs and Benefits of t
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he Renewable Fuel Standard". The dataset consists of: (1) The replication codes and data for the BEPAM model. The code file is named as output.gms. (BEPAM-Social cost model-ERL.zip) (2) Simulation results from the BEPAM model (BEPAM_Simulation_Results.csv) * Item (1) is in GAMS format. Item (2) is in text format.
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keywords:
Social Cost of Carbon; Social Cost of Nitrogen; Cost-Benefit Analysis; Indirect Land-Use Change
published: 2020-10-11
Narang, Kanika; Sundaram, Hari; Chung, Austin; Chaturvedi, Snigdha (2020): Academic Dataset. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-0454350_V1
This dataset contains the publication record of 6429 computer science researchers collected from the Microsoft Academic dataset provided th
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rough their Knowledge Service API (http://bit.ly/microsoft-data).
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published: 2020-11-01
Packard, Stephen; Spyreas, Greg (2020): Dramatic long-term restoration of an oak woodland due to multiple, sustained management treatments. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-0887518_V1
A 30 year record of the vegetation in sample plots in a woodland in the Chicago area. The changes in these plots over time show how ecolog
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ical restoration can yield dramatic results.
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keywords:
woodland; ecological restoration; floristic quality; vegetation; plant ecology; ecological management
published: 2020-10-30
Warner, Genoa R; Pacyga, Diana; Strakovsky, Rita; Smith, Rebecca; James-Todd, Tamarra; Williams, Paige; Hauser, Russ; Meling, Daryl; Li, Lucas; Flaws, Jodi (2020): Phthalates and Hot Flashes SI. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-9238850_V1
Supporting information for "Urinary Phthalate Metabolite Concentrations and Hot Flashes in Pre- and Perimenopausal Women from the Midlife W
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omen’s Health Study." This file contains tables of the results of stratified analyses of the associations of hot flash outcomes with urinary phthalates metabolites by menopause status, race/ethnicity, body mass index, and depressive status. This file also contains supplementary HPLC methods for the analysis of phthalate metabolites.
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keywords:
Hot flashes; menopause; phthalates; women
published: 2020-10-27
Kansara, Yogeshwar; Hoang, Linh (2020): Included Articles from Cochrane Reviews. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-8212056_V2
The data file contains a list of included studies with their detailed metadata, taken from Cochrane reviews which were used in a project as
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sociated with the manuscript "Evaluation of an automated probabilistic RCT Tagger applied to published Cochrane reviews".
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keywords:
Cochrane reviews; automation; randomized controlled trial; RCT; systematic review
published: 2020-10-27
Kansara, Yogeshwar; Hoang, Linh; Dong, Xiaoru; Xie, Jingyi; Schneider, Jodi (2020): Sampled Cochrane Reviews Included RCTs Only. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-3285089_V2
The data file contains detailed information of the Cochrane reviews that were used in a project associated with the manuscript (working tit
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le) "Evaluation of an automated probabilistic RCT Tagger applied to published Cochrane reviews".
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keywords:
Cochrane reviews; systematic reviews; randomized control trial; RCT; automation
published: 2020-10-27
Lundstrom, Craig (2020): Experimental data from K-Na-Al-Si-H oxides systems. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-7110302_V1
keywords:
Phase equilibria; Granite; Quartz; Feldspar
published: 2020-10-13
Kozuch, Laura (2020): Cahokia, Mound 72 Shell Artifacts. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-0946771_V1
Data in this spreadsheet presents basic information on Cahokia, Mound 72 shell artifacts. This includes taxonomic identifications, provenie
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nce, and bead measurements. There are five tabs: 1. Raw data; 2. Disk bead measurements; 3. Columella bead measurements; 4. Data on cups and pendants; and, 5. Information on whole shell beads.
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keywords:
Cahokia; Mound 72; Lightning whelk; Bead crafting