Illinois Data Bank
Deposit Dataset
Find Data
Policies
Guides
Contact Us
Log in with NetID
University Library, University of Illinois at Urbana-Champaign
Toggle navigation
Illinois Data Bank
Deposit Dataset
Find Data
Policies
Guides
Contact Us
Log in with NetID
<
1
2
…
9
10
11
12
13
14
15
16
17
…
25
26
>
25 per page
50 per page
Show All
Displaying datasets 301 - 325 of 633 in total
Clear Filters
Generate Report from Search Results
Subject Area
Life Sciences (330)
Social Sciences (135)
Physical Sciences (91)
Technology and Engineering (62)
Uncategorized (14)
Arts and Humanities (1)
Funder
Other (192)
U.S. National Science Foundation (NSF) (187)
U.S. Department of Energy (DOE) (63)
U.S. National Institutes of Health (NIH) (59)
U.S. Department of Agriculture (USDA) (41)
Illinois Department of Natural Resources (IDNR) (17)
U.S. Geological Survey (USGS) (6)
U.S. National Aeronautics and Space Administration (NASA) (5)
Illinois Department of Transportation (IDOT) (4)
U.S. Army (2)
Publication Year
2021 (108)
2022 (108)
2020 (96)
2023 (78)
2019 (72)
2018 (62)
2017 (36)
2024 (36)
2016 (30)
2025 (2)
2009 (1)
2011 (1)
2012 (1)
2014 (1)
2015 (1)
License
CC0 (352)
CC BY (261)
custom (20)
published: 2021-12-01
Crist, Samantha; Kopsco, Heather; Miller, Alexandria; Gronemeyer, Margaret; Mateus-Pinilla, Nohra; Smith, Rebecca (2021): Knowledge, attitudes, and practices of veterinary professionals towards ticks and tick-borne diseases in Illinois. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-9227641_V1
An online knowledge, attitudes, and practices survey on ticks and tick-borne diseases was distributed to veterinary professionals in Southern and Central Illinois during summer and fall 2020. These are the raw data associated with that survey and the survey questions used. * NOTE: "age" and "gender" variables were removed from the data to protect participants.
keywords:
ticks; veterinary medicine; tick-borne disease; survey
published: 2021-11-23
Riemer, Nicole; Yao, Yu; Dawson, Matthew; Dabdub, Donald (2021): Data for: Evaluating the impacts of cloud processing on resuspended aerosol particles after cloud evaporation using a particle-resolved model. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-8367769_V2
This dataset contains simulation results from PartMC-MOSAIC-CAPRAM used in the article ”Eval- uating the impacts of cloud processing on resuspended aerosol particles after cloud evaporation using a particle-resolved model”. In this V2, there are eight folders: one for urban plume simulation to provide the initial particle population for cloud processing, the other four folders are for the four cloud cycles simulated and the last two are for the coagulation cases. Within the urban plume simulation, there are 25 NetCDF files hourly output from PartMC-MOSAIC simulations containing the gas and particle information. Within the four cloud cycle folders, there are 25 subdirectories that contain the cloud processing results for aerosol population from urban plume environment. For each subdirectory, there are 31 NetCDF files out- put every minute from PartMC-MOSAIC-CAPRAM simulations containing aerosol and gas information after aqueous chemistry. Another two folders are for the cases considering Brownian coagulation and sedimentation coalescence. Each contained 93 NetCDF files, produced from repeating the 30-minutes simulations for three times to consider the coagulation randomness. The low polluted case folder includes the simulated cloud processing results for 25 urban plume cases with less aerosol number concentration. This dataset was used to investigate the effects of cloud processing on aerosol mixing state and CCN properties.
keywords:
cloud process; coagulation; aqueous chemistry; aerosol mixing state; CCN
published: 2021-08-27
Edmonds, Devin (2021): Data for Poison Frogs in U.S. Collections. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-4717502_V1
The dataset shows all poison frogs (superfamily Dendrobatoidea) in private U.S. collections during 1990–2020. For each species and color morph, there is a date of arrival, the way it arrived in U.S. collections, and detailed notes related to its presence in the pet trade.
keywords:
pet trade; amphibians; Dendrobatidae
published: 2021-11-16
Prada, Cecilia M.; Turner, Benjamin L.; Dalling, James W. (2021): Seedling traits in oak and mix stands. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-7636863_V1
Data from an a field experiment at El Velo, Chiriqui, Republic of Panama. Data contain information about functional traits of seedlings growing in different treatments including type of forest, nitrogen addition and organic matter.
keywords:
Mycorrhiza; nitrogen; oak forest; Panama; plant-soil feedbacks, seedling growth
published: 2021-10-27
de Jesús Astacio, Luis Miguel ; Prabhakara, Kaumudi Hassan; Li, Zeqian; Mickalide, Harry; Kuehn , Seppe (2021): Closed microbial communities self-organize to persistently cycle carbon -- 16S Sequencing data. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-8967648_V1
Shared dataset consists of 16S sequencing data of microbial communities. Each community is composed of heterotrophic bacteria derived from one of two soil samples and the model algae Chlamydomonas reinhardtii. Each comunity was placed in a materially closed environment with an initial supply of carbon in the media and subjected to light-dark cycles. The closed microbial ecosystems (CES) survived via carbon cycling. Each CES was subjected to rounds of dilution, after which the community was sequenced (data provided here). The shared dataset allowed us to conclude that CES consistently self-assembled to cycle carbon (data not provided) via conserved metabolic capabilites (data not provided) dispite differences in taxonomic composition (data provided). --------------------------- Naming convention: [soil sample = A or B][CES replicate = 1,2,3, or 4]_[round number = 1,2,3,or 4]_[reverse read = R or forward read = F]_filt.fastq Example -- A1_r1_F_filt.fastq means soil sample A, CES replicate 1, end of round1, forward read
keywords:
16S seq; .fastq; closed microbial ecosystems; carbon cycling
published: 2021-11-03
Liu, Baqiao; Warnow, Tandy (2021): Data from Scalable Species Tree Inference with External Constraints. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-2566000_V1
This dataset contains re-estimated gene trees from the ASTRAL-II [1] simulated datasets. The re-estimated variants of the datasets are called MC6H and MC11H -- they are derived from the MC6 and MC11 conditions from the original data (the MC6 and MC11 names are given by ASTRID [2]). The uploaded files contain the sequence alignments (half-length their original alignments), and the re-estimated species trees using FastTree2. Note: - "mc6h.tar.gz" and "mc11h.tar.gz" contain the sequence alignments and the re-estimated gene trees for the two conditions - the sequence alignments are in the format "all-genes.phylip.splitted.[i].half" where i means that this alignment is for the i-th alignment of the original dataset, but truncating the alignment halving its length - "g1000.trees" under each replicate contains the newline-separated re-estimated gene trees. The gene trees were estimated from the above described alignments using FastTree2 (version 2.1.11) command "FastTree -nt -gtr" [1]: Mirarab, S., & Warnow, T. (2015). ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes. Bioinformatics, 31(12), i44-i52. [2]: Vachaspati, P., & Warnow, T. (2015). ASTRID: accurate species trees from internode distances. BMC genomics, 16(10), 1-13.
keywords:
simulated data; ASTRAL; alignments; gene trees
published: 2021-11-05
Keralis, Spencer D. C.; Yakin, Syamil (2021): Becoming A Trans Inclusive Library - Library Employee Survey. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-0888551_V1
This data set contains survey results from a 2021 survey of University of Illinois University Library employees conducted as part of the Becoming A Trans Inclusive Library Project to evaluate the awareness of University of Illinois faculty, staff, and student employees regarding transgender identities, and to assess the professional development needs of library employees to better serve trans and gender non-conforming patrons. The survey instrument is available in the IDEALS repository: http://hdl.handle.net/2142/110080.
keywords:
transgender awareness, academic library, gender identity awareness, professional development opportunities
published: 2021-11-05
Keralis, Spencer D. C.; Yakin, Syamil (2021): Becoming A Trans Inclusive Library - Patron Survey. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-5994799_V1
This data set contains survey results from a 2021 survey of University of Illinois University Library patrons who identify as transgender or gender non-conforming conducted as part of the Becoming a Trans Inclusive Library Project to assess the experiences of transgender patrons seeking information and services in the University Library. Survey instruments are available in the IDEALS repository: http://hdl.handle.net/2142/110081.
keywords:
transgender awareness; academic library; gender identity awareness; patron experience
published: 2021-11-04
Dawson, Matthew; Guzman Ruiz, Christian; Curtis, Jeffrey H.; Acosta, Mario C.; Zhu, Shupeng; Dabdub, Donald; Conley, Andrew; West, Matthew; Riemer, Nicole; Jorba, Oriol (2021): Data from: Chemistry Across Multiple Phases (CAMP) version 1.0: An integrated multi-phase chemistry model. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-8012140_V1
This dataset contains all the data for the results section in the study presented in the paper entitled "Chemistry Across Multiple Phases (CAMP) version 1.0: An integrated multi-phase chemistry mode" submitted to Geoscientific Model Development (GMD). In this paper, two sets of simulations were run to test CAMP with this results included here. This consists of (1) box model inputs and outputs presented in Section 4.2 for modal, binned and particle-resolved simulations to compare the application of identical chemical mechanisms to different aerosol representations and (2) the 3D Eulerian output presented in Section 4.3.
keywords:
Atmospheric chemistry; Aerosols and particles; Numerical Modeling
published: 2021-10-22
Carney, Sean; Ma, Wen; Chemla , Yann (2021): Source data for Kinetic and structural mechanism for DNA unwinding by a non-hexameric helicase. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-5556865_V1
This dataset includes the source data for Figures 1-4 and supplementary figures 1-10 for the manuscript "Kinetic and structural mechanism for DNA unwinding by a non-hexameric helicase".
published: 2021-10-28
Suski, Cory; Curtis-Quick, Jocelyn (2021): Why the Stall? Using Metabolomics to Define the Lack of Upstream Movement of Invasive Bigheaded Carp in the Illinois River. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-5190701_V2
Bigheaded carp were collected from the Illinois and Des Plaines Rivers, parts of the Illinois Waterway, from May to November 2018. A total of 93 fish were collected during sampling for a study comprised of 40 females, 41 males, and 12 unsexed fish. GC/MS metabolite profiling analysis detected 180 compounds. Livers from carp at the leading edge had differences in energy use and metabolism, and suppression of protective mechanisms relative to downstream fish; differences were consistent across time. This body of work provides evidence that water quality is linked to carp movement in the Illinois River. As water quality in this region continues to improve, consideration of this impact on carp spread is essential to protect the Great Lakes.
keywords:
water quality; metabolites; range expansion; energy; contaminants
published: 2021-10-24
Tillman, Francis E.; Bakken, George S.; O'Keefe, Joy M. (2021): Data for Design modifications affect bat box temperatures and suitability as maternity habitat. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-7904190_V1
This dataset contains daily and hourly temperature measurements in twenty different bat box designs deployed in central Indiana, USA from May to September 2018. Daily and hourly environmental data (temperature, solar radiation, wind speed and direction) are also included for days and hours sampled. Bat box temperature data were reclassified to cool (</= 30°C), permissive (30.1–39.9°C), and stressful (>/= 40°C) categories according to known temperature tolerances of temperate-zone bats.
keywords:
bat box; design; environmental variables; microclimate; temperature
published: 2021-10-15
Swenson, Gary (2021): SCIAMACHY IAV Oxygen data, 2002-2012. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-9526770_V1
Atomic oxygen data from SCIAMACHY, for the MLT, 2002-2012, averaged for 26, 14 day periods, beginning January 1.
keywords:
SCIAMACHY data
published: 2021-10-15
Swenson, Gary (2021): SABER Intra-annual Data. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-6186460_V1
Atomic oxygen densities in the MLT, averaged for 2002-2018 for 26, 14 day periods, beginning January 1.
keywords:
SABER data
published: 2021-10-15
Perez, Sierra; Dalling, James; Fraterrigo, Jennifer (2021): Trelease and Brownfields Woods tree decay dataset. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-4547091_V1
Information on the location, dimensions, time of treefall or death, decay state, wood nutrient, wood pH and wood density data, and soil moisture, slope, distance from forest edge and soil nutrient data associated with the publication "Interspecific wood trait variation predicts decreased carbon residence time in changing forests" authored by Sierra Perez, Jennifer Fraterrigo, and James Dalling. ** <b>Note:</b> Blank cells indicate that no data were collected.
keywords:
wood decay; carbon residence time; coarse woody debris; decomposition, temperate forests
published: 2021-10-15
Jianhao, Peng; Idoia, Ochoa (2021): Synthetic datasets for SimiC . University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-4996748_V1
This is the 5 states 5000 cells synthetic expression file we used for validation of SimiC, a single cell gene regulatory network inference method with similarity constraints. Ground truth GRNs are stored in Numpy array format, and expression profiles of all states combined are stored in Pandas DataFrame in format of Pickle files.
keywords:
Numpy array; GRNs; Pandas DataFrame;
published: 2021-10-13
Lyu, Fangzheng; Xu, Zewei; Ma, Xinlin; Wang, Shaohua; Li, Zhiyu; Wang, Shaowen (2021): A Vector-Based Method for Drainage Network Analysis Based on LiDAR Data . University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-6359717_V1
Drainage network analysis is fundamental to understanding the characteristics of surface hydrology. Based on elevation data, drainage network analysis is often used to extract key hydrological features like drainage networks and streamlines. Limited by raster-based data models, conventional drainage network algorithms typically allow water to flow in 4 or 8 directions (surrounding grids) from a raster grid. To resolve this limitation, this paper describes a new vector-based method for drainage network analysis that allows water to flow in any direction around each location. The method is enabled by rapid advances in Light Detection and Ranging (LiDAR) remote sensing and high-performance computing. The drainage network analysis is conducted using a high-density point cloud instead of Digital Elevation Models (DEMs) at coarse resolutions. Our computational experiments show that the vector-based method can better capture water flows without limiting the number of directions due to imprecise DEMs. Our case study applies the method to Rowan County watershed, North Carolina in the US. After comparing the drainage networks and streamlines detected with corresponding reference data from US Geological Survey generated from the Geonet software, we find that the new method performs well in capturing the characteristics of water flows on landscape surfaces in order to form an accurate drainage network. This dataset contains all the code, notebooks, datasets used in the study conducted for the research publication titled " A Vector-Based Method for Drainage Network Analysis Based on LiDAR Data ". ## What's Inside A quick explanation of the components * `A Vector Approach to Drainage Network Analysis Based on LiDAR Data.ipynb` is a notebook for finding the drainage network based on LiDAR data *`Picture1.png` is a picture representing the pseudocode of our new algorithm * HPC` folder contains codes for running the algorithm with sbatch in HPC ** `execute.sh` is a bash script file that use sbatch to conduct large scale analysis for the algorithm ** `run.sh` is a bash script file that calls the script file `execute.sh` for large scale calculation for the algorithm ** `run.py` includes the codes implemented for the algorithm * `Rowan Creek Data` includes data that are used in the study ** `3_1.las` and `3_2.las ` are the LiDAR data files that is used in our analysis presented in the paper. Users may use this data file to reproduce our results and may replace it with their own LiDAR file to run this method over different areas ** `reference` folder includes reference data from USGS *** `reference_3_1.tif` and `reference_3_2.tif` are reference data for the drainage system analysis retrieved from USGS.
keywords:
CyberGIS; Drainage System Analysis; LiDAR
published: 2021-10-10
Detmer, Thomas (2021): Temperature, dissolved oxygen, and Secchi depth of Illinois Reservoirs. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-1187851_V1
This data set describes temperature, dissolved oxygen, and secchi depth in 1-m interval profiles in the deepest point in 10 Illinois reservoirs between the years 1995 and 2016.
keywords:
Water temperature; dissolved oxygen; secchi depth; climate change
published: 2021-10-11
Peng, Jianhao; Ochoa, Idoia (2021): ClonalKinetic Data and Intermediate Results of SimiC. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-3975180_V1
This dataset contains the ClonalKinetic dataset that was used in SimiC and its intermediate results for comparison. The Detail description can be found in the text file 'clonalKinetics_Example_data_description.txt' and 'ClonalKinetics_filtered.DF_data_description.txt'. The required input data for SimiC contains: 1. ClonalKinetics_filtered.clustAssign.txt => cluster assignment for each cell. 2. ClonalKinetics_filtered.DF.pickle => filtered scRNAseq matrix. 3. ClonalKinetics_filtered.TFs.pickle => list of driver genes. The results after running SimiC contains: 1. ClonalKinetics_filtered_L10.01_L20.01_Ws.pickle => inferred GRNs for each cluster 2. ClonalKinetics_filtered_L10.01_L20.01_AUCs.pickle => regulon activity scores for each cell and each driver gene. <b>NOTE:</b> “ClonalKinetics_filtered.rds” file which is mentioned in “ClonalKinetics_filtered.DF_data_description.txt” is an intermediate file and the authors have put all the processed in the pickle/txt file as described in the filtered data text.
keywords:
GRNs;SimiC;RDS;ClonalKinetic
published: 2021-10-04
Wang, Justin; Curtis, Jeffrey H; Riemer, Nicole; West, Matthew (2021): Data from: Learning coagulation processes with combinatorially-invariant neural networks. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-3904737_V1
This dataset contains all the necessary information to recreate the study presented in the paper entitled "Learning coagulation processes with combinatorially-invariant neural networks". This consists of (1) the aggregated output files used for machine learning, (2) the machine learning codes used to learn the presented models, (3) the PartMC model source code that was used to generate the simulation data and (4) the Python scripts used construct the scenario library for training and testing simulations. This data was used to investigate a method (combinatorally-invariant neural network) for learning the aerosol process of coagulation. This data may be useful for application of other methods.
keywords:
Machine learning; Atmospheric chemistry; Particle-resolved modeling; Coagulation; Atmospheric Science
published: 2021-02-18
Wang, Shaowen; Lyu, Fangzheng; Wang, Shaohua; Catlet, Charles; Padmanabhan, Anand; Soltani, Kiumars (2021): Data for Integrating CyberGIS and Urban Sensing for Reproducible Streaming Analytics. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-0286574_V1
Increasingly pervasive location-aware sensors interconnected with rapidly advancing wireless network services are motivating the development of near-real-time urban analytics. This development has revealed both tremendous challenges and opportunities for scientific innovation and discovery. However, state-of-the-art urban discovery and innovation are not well equipped to resolve the challenges of such analytics, which in turn limits new research questions from being asked and answered. Specifically, commonly used urban analytics capabilities are typically designed to handle, process, and analyze static datasets that can be treated as map layers and are consequently ill-equipped in (a) resolving the volume and velocity of urban big data; (b) meeting the computing requirements for processing, analyzing, and visualizing these datasets; and (c) providing concurrent online access to such analytics. To tackle these challenges, we have developed a novel cyberGIS framework that includes computationally reproducible approaches to streaming urban analytics. This framework is based on CyberGIS-Jupyter, through integration of cyberGIS and real-time urban sensing, for achieving capabilities that have previously been unavailable toward helping cities solve challenging urban informatics problems. The files included in this dataset functions as follows: 1) Spatial_interpolation.ipynb is a python based Jupyter notebook that enables users to conduct spatial interpolation with AoT data; 2) Urban_Informatics.ipynb is a Jupyter notebook that helps to explore the AoT dataset; 3) chicago-complete.weekly.2019-09-30-to-2019-10-06.tar includes all the high-frequency urban sensing data from AoT sensors from 2019 September 30th to 2019 October 6th collected in Chicago, US; 4) sensors.csv is a processed dataset including information about the temperature in Chicago, and it is used in Spatial_interpolation.ipynb.
keywords:
CyberGIS; Urban informatics; Array of Things
published: 2021-09-17
Stern, Jessica; Herman, Brook D. ; Matthews, Jeffrey (2021): Data from determining vegetation metric robustness to environmental and methodological variables . University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-0938556_V1
We studied vegetation metric robustness to environmental (season, interannual, and regional) and methodological (observer) variables, as well as adequate sample size for vegetation metrics across four regions of the United States.
keywords:
coefficients of conservatism; floristic quality assessment; restoration; vegetation metric;
published: 2021-09-06
Vargas, Fabio (2021): Mesospheric gravity wave activity estimated via airglow imagery, multistatic meteor radar, and SABER data taken during the SIMONe–2018 campaign. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-8585682_V1
Airglow images and Meteor radar data used in the paper "Mesospheric gravity wave activity estimated via airglow imagery, multistatic meteor radar, and SABER data taken during the SIMONe–2018 campaign".
keywords:
airglow; meteor radar; gravity waves; momentum flux;
published: 2021-09-03
Clark, Lindsay V.; Mays, Wittney; Lipka, Alexander E.; Sacks, Erik J. (2021): Dataset for evaluating the Hind/He statistic in polyRAD. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-4814898_V1
All of the files in this dataset pertain to the evaluation of a novel statistic, Hind/He, for distinguishing Mendelian loci from paralogs. They are derived from a RAD-seq genotyping dataset of diploid and tetraploid Miscanthus sacchariflorus.
published: 2021-08-28
Southey, Bruce; Rodriguez-Zas, Sandra (2021): Metabolics of weaning and maternal immune activation in 22 day old pigs. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-9043394_V1
Metabolite identifications and profiles of liver samples from 22 day old male and female pigs from gilt that exposed to porcine reproductive and respiratory syndrome virus (P) or not (C) that were weaned at 21 days of age (W) or not (N). Profiles were obtained by University of Illinois Carver Metabolomics Center. Spectrum for each sample was acquired using a gas chromatography mass spectrometry system consisting of an Agilent 7890 gas chromatograph, an Agilent 5975 MSD, and an HP 7683B auto sampler.
keywords:
gas chromatography; mass spectrometry; maternal immune activation; weaning; liver