Illinois Data Bank
Deposit Dataset
Find Data
Policies
Guides
Contact Us
Log in with NetID
Toggle navigation
Illinois Data Bank
Deposit Dataset
Find Data
Policies
Guides
Contact Us
Log in with NetID
Displaying 26 - 50 of 382 in total
<
1
2
3
4
5
6
7
8
9
…
15
16
>
25 per page
50 per page
Show All
Go
Clear Filters
Generate Report from Search Results
Subject Area
Life Sciences (382)
Social Sciences (0)
Physical Sciences (0)
Technology and Engineering (0)
Uncategorized
Arts and Humanities (0)
Funder
Other (140)
U.S. National Science Foundation (NSF) (92)
U.S. Department of Energy (DOE) (45)
U.S. Department of Agriculture (USDA) (44)
U.S. National Institutes of Health (NIH) (31)
Illinois Department of Natural Resources (IDNR) (19)
U.S. Geological Survey (USGS) (5)
Illinois Department of Transportation (IDOT) (3)
U.S. National Aeronautics and Space Administration (NASA) (2)
U.S. Army (2)
Publication Year
2021 (66)
2024 (61)
2020 (60)
2022 (55)
2019 (42)
2023 (40)
2018 (24)
2017 (19)
2016 (12)
2025 (3)
2009 (0)
2011 (0)
2012 (0)
2014 (0)
2015 (0)
License
CC0 (229)
CC BY (140)
custom (13)
Illinois Data Bank Dataset Search Results
Dataset Search Results
published: 2024-09-03
Bishop, Rebecca; Jonk, Kaitlyn M; Migliorisi, Alessandro; Austin, Scott M; Mullins, Emma C; Wilkins, Pamela (2024): Effect of phenylepherine-induced increased PCV on viscoelastic coagulation testing in horses. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-0295993_V1
Healthy mares were administered phenylephrine to induce transient polycythemia secondary to splenic contraction. Data was collected at baseline (T0), 5 minutes (T1) and 2 hours (T2) post-phenylephrine infusion. Collected data included baseline CBC, chemistry, fibrinogen, and serum amyloid A; at each time point viscoelastic coagulation profiles (VCM Vet), traditional in-vitro coagulation profiles, and ultrasonographic measurements of the spleen were obtained.
keywords:
horse; coagulation; polycythemia; blood clotting; viscoelastic testing
published: 2022-10-10
Varela, Sebastian; Leakey, Andrew; Sacks, Erik (2022): UAV remote sensing imagery - Miscanthus trials 2020 - Energy Farm - UIUC . University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-5689586_V1
Aerial imagery utilized as input in the manuscript "Deep convolutional neural networks exploit high spatial and temporal resolution aerial imagery to predict key traits in miscanthus" . Data was collected over M. Sacchariflorus and Sinensis breeding trials at the Energy Farm, UIUC in 2020. Flights were performed using a DJI M600 mounted with a Micasense Rededge multispectral sensor at 20 m altitude around solar noon. Imagery is available as tif file by field trial and date (10). The post-processing of raw images into orthophoto was performed in Agisoft Metashape software. Each crop surface model and multispectral orthophoto was stacked into an unique raster stack by date and uploaded here. Each raster stack includes 6 layers in the following order: Layer 1 = crop surface model, Layer 2 = Blue, Layer 3 = Green, Layer 4 = Red, Layer 5 = Rededge, and Layer 6 = NIR multispectral bands. Msa raster stacks were resampled to 1.67 cm spatial resolution and Msi raster stacks were resampled to 1.41 cm spatial resolution to ease their integration into further analysis. 'MMDDYYYY' is the date of data collection, 'MSA' is M. Sacchariflorus trial, 'MSI' is Miscanthus Sinensis trial, 'CSM' is crop surface model layer, and 'MULTSP' are the five multispectral bands.
keywords:
convolutional neural networks; miscanthus; perennial grasses; bioenergy; field phenotyping; remote sensing; UAV
published: 2024-08-13
Maffeo, Christopher; Chhabra, Hemani; Aksimentiev, Aleksei (2024): Scripts for computationally estimating the current in "A lumen-tunable triangular DNA nanopore for molecular sensing and cross-membrane transport". University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-6464580_V1
Scripts used to computationally estimate the current through a DNA nanopore, starting from an equilibrated oxDNA configuration, in association with the manuscript "A lumen-tunable triangular DNA nanopore for molecular sensing and cross-membrane transport".
keywords:
DNA origami nanopore; Steric exclusion model; Ionic current
published: 2024-08-24
Jones, Todd; Llamas, Alfredo; Phillips, Jennifer (2024): Data for Jones et al. GCB-23-1273.R1. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-6010827_V1
Dataset associated with Jones et al. GCB-23-1273.R1 submission: Phenotypic signatures of urbanization? Resident, but not migratory, songbird eye size varies with urban-associated light pollution levels. Excel CSV file with all of the data used in analyses and file with descriptions of each column.
keywords:
body size; demographics; eye size; phenotypic divergence; songbirds; sensory pollution; urbanization
published: 2021-05-10
Varela Quintela, Sebastian; Leakey, Andrew (2021): UAV-based multispectral time-series imagery of biomass sorghum - 2019. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-0353090_V1
UAV-based high-resolution multispectral time-series orthophotos utilized to understand the relation between growth dynamics, imagery temporal resolution, and end-of-season biomass productivity of biomass sorghum as bioenergy crop. Sensor utilized is a RedEdge Micasense flown at 40 meters above ground level at the Energy Farm- UIUC in 2019.
keywords:
Unmanned aerial vehicles; High throughput phenotyping; Machine learning; Bioenergy crops
published: 2024-08-19
Ward, Michael; Stewart, Sarah; Benson, Thomas (2024): Whip-poor-will nesting success. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-7835826_V1
Data on the nesting success and post-fledgling survival of Eastern Whip-poor-wills in central Illinois. Data was part of Sarah Stewart's MS project at the University of Illinois.
keywords:
bird nesting success; post-fledgling survival; eastern whip-poor-will
published: 2024-08-17
Storms, Suzanna; Leonardi-Cattolica, Antonio; Prezioso, Tara; Varga, Csaba; Wang, Leyi; Lowe, James (2024): Data for Influenza A virus shedding and reinfection during the post-weaning period in swine: longitudinal study of two nurseries. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-0440849_V1
This dataset includes the RT-PCR shedding data and primers used for whole genome sequencing of Influenza A virus in swine. It also includes the GenBank accession numbers for all segments generated by Influenza A virus sequencing from nasal swab samples. Additionally, all nucleotide changes are listed by sample.
published: 2024-08-11
Curtis, Jeffrey H.; Riemer, Nicole; West, Matthew (2024): Data for Explicit stochastic advection algorithms for the regional scale particle-resolved atmospheric aerosol model WRF-PartMC (v1.0). University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-3847217_V2
This dataset contains all material required to produce the figures found within the manuscript submitted to Geoscientific Model Development entitled “Explicit stochastic advection algorithms for the regional scale particle-resolved atmospheric aerosol model WRF-PartMC (v1.0)”. The dataset consists of Python Jupyter notebooks and any applicable WRF-PartMC output. This dataset covers the three numerical examples of the manuscript, 1D advection by a uniform constant wind, a 2D rotational flow and a 3D time-evolving WRF simulated flow.
keywords:
Atmospheric chemistry; Atmospheric Science; Particle-resolved modeling; Numerical modeling; Advection;
published: 2024-07-31
LaBonte, Nicholas R.; Zerpa-Catanho, Dessiree P.; Liu, Siyao; Xiao, Liang; Dong, Hongxu; Clark, Lindsay V.; Sacks, Erik J. (2024): Improving precision and accuracy of genetic mapping with genotyping-by-sequencing data in outcrossing species. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-1435220_V1
This dataset contains all data and supplementary materials from "Improving precision and accuracy of genetic mapping with genotyping-by-sequencing data in outcrossing species". An Excel file a list of all QTLs and linkage group length (in cM) obtained with two different SNP-calling methods (Tassel-Uneak and Tassel-GBS), genetic map-construction method (linkage-only and reference order-corrected) and depth filters (12x, 20x, 30x and 40x) for genetic mapping of 18 biomass yield traits in a biparental Miscanthus sinensis population using RAD-Seq SNPs is provided as "Supplementary file 1". A Perl script with the code for filtering VCF and HapMap-formatted data files is provided as “Supplementary file 2”. Phenotype data used for QTL mapping is provided as “Supplementary File 3”. A Perl script with the code for the simulation study is provided as “Supplementary file 4”.
keywords:
HapMapParser; GenotypingSimulator
published: 2024-07-22
Ferguson, John; Schumuker, Peter; Dmitrieva, Anna; Quach, Truyen; Zhang, Tieling; Ge, Zhengxiang; Nersesian, Natalya; Sato, Shirley; Clemente, Thomas; Leakey, Andrew (2024): Data for Reducing stomatal density by expression of a synthetic EPF increases leaf intrinsic water use efficiency and reduces plant water use in a C4 crop. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-4017279_V1
Raw data for the results presented in Ferguson et al 2024.
keywords:
Sorghum bicolor; stomata; stomatal conductance; C4 photosynthesis; water-use efficiency; drought
published: 2024-07-12
Tejeda-Lunn, Daniel; Kannan, Baskaran; Germon, Amandine; Leverett, Alistair; Clemente, Tom; Altpeter, Fredy; Leakey, Andrew (2024): Dataset for Greater aperture counteracts effects of reduced stomatal density on WUE: a case study on sugarcane and meta-analysis. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-9701546_V1
Data for each figure of the article "Greater aperture counteracts effects of reduced stomatal density on WUE: a case study on sugarcane and meta-analysis" published in J. Ex. Bot.
keywords:
stomatal density; water use efficiency; stomatal conductance; epidermal patterning factor; epidermal patterning
published: 2022-02-11
Trivellone, Valeria; Cao, Yanghui; Blackshear, Millon; Kim, Chang-Hyun; Stone, Christopher (2022): FASTA file of the final sequence alignment used in the haplotype analyses of Culex pipiens complex populations collected in south-eastern Illinois (2016-2017). University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-5032907_V1
The Culex_Trivellone_etal.fas fasta file contains the original final sequence alignment used in the haplotype analyses of Trivellone et al. (Frontiers in Public Health, under review). The 492 sequences (from specimens of Culex pipiens complex collected in different habitat types using a BG-sentinel traps) were aligned using PASTA v1.8.5 under default settings. The final dataset contains 686 positions of the cytochrome c oxidase subunit I (COI) mitochondrial gene. The data analyses are further described in the cited original paper.
keywords:
Culex; Culicidae; COI; mosquito surveillance, species assemblages
published: 2024-07-11
Pelech, Elena; Long, Steve (2024): Soybean/Soja mesophyll conductance during light induction. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-7809185_V2
This dataset includes the gas exchange and TDL (tunable diode laser) files between 4 accessions of Glycine soja and 1 elite accession of Glycine max (soybean) during light induction. In this V2, code files for Matlab and R are also included to calculate mesophyll conductance and calculate the limitation on photosynthesis, respectively.
keywords:
photosynthesis; mesophyll conductance; soybean; light induction
published: 2024-07-11
Schneider, Amy; Suski, Cory (2024): Dataset for Molecular and physical disturbance of silver carp along the Illinois River gradient. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-2785696_V1
published: 2024-07-11
Schneider, Amy; Suski, Cory (2024): Dataset for Acute exposure to water from the Chicago Area Waterway System induces molecular indices of stress and disturbance in silver carp: implications for deterrence to range expansion. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-0347483_V1
published: 2024-07-11
Gholamalamdari, Omid; Belmont, Andrew (2024): Supporting material for Omid Gholamalamdari et al. 2024. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-4383352_V1
This repository contains the data and computational analysis notebooks that were used in the following manuscript. For more information on the methods and contributing authors, please refer to the original manuscript. "Beyond A and B Compartments: how major nuclear locales define nuclear genome organization and function Omid Gholamalamdari et al. 2024"
keywords:
genomic analysis; R markdown; genomic segmentations
published: 2024-07-09
Storms, Suzanna; Shisler, Joanna; Nguyen, Thanh H.; Zuckermann, Federico; Lowe, James (2024): Data for Lateral flow paired with RT-LAMP: a speedy solution for Influenza A Virus detection in swine. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-0691762_V1
This dataset includes the RT-PCR results, RT-LAMP results, and the minutes to positive ROC curve calculations. This dataset includes data for the synthetic gBlock, cell culture, and clinical sample assays (nasal swabs and nasal wipes). Also included is a list of FDA approved point of care tests for influenza A virus to date (2-16-2024). MIQE guidelines are also included.
published: 2024-04-11
Margenot, Andrew; Zhou, Shengnan; Xu, Suwei; Condron, Leo; Metson, Geneviève; Haygarth, Philip; Wade, Jordon; Agyeman, Price Chapman (2024): The missing phosphorus legacy of the Anthropocene: quantifying residual phosphorus in the biosphere. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-1538422_V1
A defining feature of the Anthropocene is the distortion of the biosphere phosphorus (P) cycle. A relatively sudden acceleration of input fluxes without a concomitant increase in output fluxes has led to net accumulation of P in the terrestrial-aquatic continuum. Over the past century, P has been mined from geological deposits to produce crop fertilizers. When P inputs are not fully removed with harvest of crop biomass, the remaining P accumulates in soils. This residual P is a uniquely anthropogenic pool of P, and its management is critical for agronomic and environmental sustainability. This dataset includes data for us to quantify residual P from different long-term managed systems. The following is the desccription of the dataset. There are 7 sheets in total. 1. P_balance: From Morrow Plots maize-maize rotaiton (1888-2021), L: Low estimation; M: medium estimation; H: high estimation; 2. M3P: From Morrow Plots selected plots (selected years), M3P_sur: Mehlich III P concentration in surface 17cm soils; M3P_sub: Mehlich III P concentration in 17-34cm subsoils; P_balance: the difference between P inputs and P outputs; TP_sur: total P stocks in surface 17cm soils; TP_sub: total P stocks in 17-34cm subsoils; 3. Morrow_Plot_P_pool_all: Group: a - labile P; b - Fe/Al-P; c - Ca-P; d - total organic P; e - non-extractable P; Fertilized: P stocks in the fertilized plot; Unfertilized: P stocks in the unfertilized plot; F-U: difference between P stocks in ther fertilized and unfertilized plots; dif%: percent difference in total P; 4. Rothamsted_P_pool_all: Treatment: Unfertilized: no fertilization; FYM: farmyard manure; PK: synthetic P and K fertilizer; Group: a - labile P; b - Fe/Al-P; c - Ca-P; d - total organic P; e - non-extractable P; P_change: differnce in P stocks over time; dif%: percent difference in total P; 5. L'Acadie_P_pool_all: Treatment: MP_LowP: moldboard plow with low rate of P fertilizer; MP_HighP: moldboard plow with high rate of P fertilizer; NT_LowP: no till with low rate of P fertilizer; NT_HighP: no till with high rate of P fertilizer; Group: a - labile P; b - Fe/Al-P; c - Ca-P; d - total organic P; e - non-extractable P; P_change: differnce in P stocks over time; dif%: percent difference in total P; 6. Rothamsted_P_pool_duration: Treatment: Unfertilized: no fertilization; FYM: farmyard manure; PK: synthetic P and K fertilizer; Duration: from a year to another year; Group: a - labile P; b - Fe/Al-P; c - Ca-P; d - total organic P; e - non-extractable P; P_change: differnce in P stocks over time; dif%: percent difference in total P; 7. L'Acadie_P_pool_duration: Treatment: MP_LowP: moldboard plow with low rate of P fertilizer; MP_HighP: moldboard plow with high rate of P fertilizer; NT_LowP: no till with low rate of P fertilizer; NT_HighP: no till with high rate of P fertilizer; Duration: from a year to another year; Group: a - labile P; b - Fe/Al-P; c - Ca-P; d - total organic P; e - non-extractable P; P_change: differnce in P stocks over time; dif%: percent difference in total P;
keywords:
phosphate rock; biosphere; balances; soil test P; long-term experiment
published: 2024-06-27
Han, Hee-Sun ; Schrader, Alex; Lee, JuYeon (2024): Data for Intracellular Spatial Transcriptomic Analysis Toolkit (InSTAnT) . University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-2930842_V1
U-2 OS MERFISH data set prepared by the Han lab at UIUC based off of procedures developed in Moffitt et al. Proc. Natl. Acad. Sci. USA 113 (39), 11046–11051. Data is comprised of ~2 million spots from 130 genes with x,y,z location, cell assignment, and correction status.
keywords:
smFISH; single transcript spatial transcriptomics; U-2 OS; Cancer cell line; MERFISH
published: 2024-07-01
Chen, Henry; Ang, Claire; Crowder, Molly; Brieher, William; Blanke, Steven (2024): Data for Revisiting bacterial cytolethal distending toxin structure and function. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-4024145_V1
This page contains the data for the publication "Revisiting bacterial cytolethal distending toxin structure and function" published in Frontiers in Cellular and Infection Microbiology in 2023.
keywords:
AB toxin; cytolethal distending toxin; protein-protein interactions; Campylobacter jejuni; DNA damage; holotoxin structure
published: 2024-06-24
Lieu, D'Feau J.; Crowder, Molly K.; Kryza, Jordan R.; Tamilselvam, Batcha; Kaminski, Paul J.; Kim, Ik-Jung; Li, Yingxing; Jeong, Eunji; Enkhbaatar, Michidmaa; Chen, Henry; Son, Sophia B.; Mok, Hanlin; Bradley, Kenneth A.; Phillips, Heidi; Blanke, Steven R. (2024): Data for “Autophagy suppression in DNA damaged cells occurs through a newly identified p53-proteasome-LC3 axis”. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-7287490_V1
This page contains the data for the manuscript "Autophagy suppression in DNA damaged cells occurs through a newly identified p53-proteasome-LC3 axis" currently available in preprint on bioRxiv
keywords:
Steven R Blanke; Cytolethal Distending Toxin; CDT; Autophagy; Genotoxicity; p53; DNA damage; DNA damage response; LC3; proteasome; proteostasis; DDR; autophagosome
published: 2024-06-17
Stuchiner, Emily; Jernigan, Wyatt; Zhang, Ziliang; Eddy, William; DeLucia, Evan; Yang, Wendy (2024): Data for Particulate organic matter predicts spatial variation in denitrification potential at the field scale. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-1146095_V1
Data includes carbon mineralization rates, potential denitrification rates, net nitrous oxide fluxes, and soil chemical properties from a laboratory incubation of soil samples collected from 20 locations across an Illinois maize field.
keywords:
denitrification; nitrous oxide; dissolved organic carbon; maize
planned publication date: 2025-06-06
Smith, Rebecca; Kopsco, Heather; Ceniceros, Ashley; Carson, Dawn (2025): Materials and Data From A Continuing Medical Education Course on Ticks and Tick-Borne Diseases and Knowledge Transfer Assessment. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-5549215_V1
The materials used to provide Continuing Medical Education on ticks and tick-borne diseases in Illinois on February 1, 2023 at Carle Hospital, along with the pre- and post-quiz and deidentified data of the quiz takers. Files: "Ticks and Tick-borne Diseases of Illinois_Final_w_speaker_notes.pptx": Presentation slides used for CME course, with notes to indicate verbal commentary "CME assessment_final.docx": Pre- and post-CME quiz questions and answers, annotated to indicate correct answers and reasoning for incorrect answers "CME_prequiz_data_for_sharing.csv": De-identified data from pre-CME quiz "CME_postquiz_data_for_sharing.csv": De-identified data from post-CME quiz, including demographics "DataCleaning_forSharing.R": R file used to clean the raw data and calculate the scores "ReadMe.txt":
keywords:
tick-borne disease; CME
published: 2024-05-30
Zhong, Jia; Khanna, Madhu; Ramea, Kalai (2024): Model Code and Data for "High Costs of GHG Abatement with Electrifying the Light-Duty Vehicle Fleet with Heterogeneous Preferences of Vehicle Consumers". University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-4125160_V1
This repository contains the the data and code to recreate the simulations in "High Costs of GHG Abatement with Electrifying the Light-Duty Vehicle Fleet with Heterogeneous Preferences of Vehicle Consumers." The model can be run by calling the bash file in the SLURM environment with parameters set for different scenarios. BEPEAM-E model details: (1) the "Main.gms" file in GAMS format that contains the initiating stage settings with input and main optimization model (2) the "output.gms" file in GAMS format that prepare the output file from BEPAM model. (3) the rest are the intermediate input files for model to generate the input and output files for the model. (4) Four bash files are the script file that call the GAMS model on the HPC that includes both HPC environment and the scenario settings. Four bash files are uploaded corresponding to 4 scenarios
keywords:
BEPAM; Greenhouse Gases; Light-Duty Vehicles; Economics
published: 2024-06-11
Mies, Timothy A. (2024): University of Illinois Urbana-Champaign Energy Farm Multiyear Weather Station Raw Data. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-6955306_V2
This dataset contains weather data taken at the University of Illinois Urbana-Champaign Energy Farm using automatic sensors and averaged every 15 minutes. Measurements include average air temperature, average relative humidity, average wind speed, maximum wind speed, average wind direction, average photosynthetically active radiation, total precipitation, and average air pressure.
keywords:
air temperature; relative humidity; wind speed; wind direction; photosynthetically active radiation; precipitation; air pressure