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Illinois Data Bank Dataset Search Results
Dataset Search Results
published: 2020-02-27
Clem, Scott; Sparbanie, Taylor; Luro, Alec; Harmon-Threatt, Alexandra (2020): Data for: Anthophilous hover flies (Diptera: Syrphidae) may visually discriminate neonicotinoid insecticides in sucrose solution: a choice experiment. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-0490928_V1
These data were collected for an experiment examining effects of neonicotinoid (clothianidin) presence on hover fly (Diptera: Syrphidae) behavior. Hover flies of two species (Eristalis arbustorum and Toxomerus marginatus) were offered a choice to feed on artificial flowers laced with sucrose solution that was either contaminated (CLO) or not contaminated (CON) with clothianidin. Two different concentrations of clothianidin in 0.5 M sucrose solution were tested: 2.5 ppb and 150 ppb. We conducted four sets of 10 trials, each trial set examining a different combination of species and clothianidin dose. Across 6 hours of video for each trial we recorded 1) number of visits to each flower that resulted in feeding, and 2) amount of time spent feeding during each visit. We found that while neither species fed significantly longer on either of the solutions, E. arbustorum appeared to avoid flowers with clothianidin particularly at high rates. In the paper, we attribute this avoidance response, partially, to hover fly-visible spectral differences between the two flower choices and discuss potential implications for field and lab-based studies. In the enclosed zip file we have included all data for this project and code scripts from R. * Note: Data folder contains 4 files (instead of 6 as mentioned in Readme): e.tenax_photoreceptors.csv; hoverfly_data_UPDATE.csv; number_visits_UPDATE.csv; and Original 2018 hover fly choice test data_Clem2020.xlsx
keywords:
Syrphidae; hoverfly; Eristalis; Toxomerus; Choice Experiment; Neonicotinoid; Clothianidin
published: 2020-02-01
Williams, Benjamin R.; Benson, Thomas J. (2020): Habitat Use of Spring Migrating Dabbling Ducks in the Wabash River Valley. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-7017235_V1
This data describes habitat use, availability, landscape level influences, and daily movement of dabbling ducks in the Wabash River Valley of southeastern Illinois and southwestern Indiana. It contains triangulated locations of individual ducks, associated habitat assignments of those locations, flood survey data to determine water availability, and randomly generated points to assess landscape level questions.
keywords:
waterfowl; ducks; dabbling; mallard; teal; habitat
published: 2020-01-28
Miao, Guofang; Guan, Kaiyu (2020): Sun-induced chlorophyll fluorescence of two Nebraska maize sites in 2017. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-5893373_V1
This dataset includes two data files that provide the time series (Jul. - Sep. 2017) data of sun-induced chlorophyll fluorescence (SIF_760) collected under sunny conditions at two maize sites (one rainfed and the other irrigated) in Nebraska in 2017. Data contain 392 SIF_760 records at the rainfed site and 707 records at the irrigated site. The timestamp uses local standard time. Data are available for the sunny conditions from 8 am to 5 pm (corresponding to 9 am to 6 pm local time) throughout the study period.
keywords:
sun-induced chlorophyll fluorescence (SIF); maize; gross primary production(GPP); light use efficiency(LUE); SIF yield
published: 2020-01-27
Cisneros, Julia (2020): Data for: Dunes in the world’s big rivers are characterised by low-angle leeside slopes and a complex shape. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-7525764_V2
Morphologic data of dunes in the World's big rivers. Morphologic descriptors for large dunes include: dune height, dune mean leeside angle, dune maximum leeside angle, dune wavelength, dune flow depth (at the crest), and the fractional height of the maximum slope on the leeside for each dune. Morphologic descriptors for small dunes include: dune height, dune mean leeside angle, dune maximum leeside angle, dune wavelength, and dune flow depth (at the crest).
keywords:
dune; bedform; rivers; morphology;
published: 2019-12-22
Zachwieja, Alexandra (2019): Data for: Climate, competition, and environment shaped human land use in Late Pleistocene Southeast Asia. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-8284108_V1
Dataset providing calculation of a Competition Index (CI) for Late Pleistocene carnivore guilds in Laos and Vietnam and their relationship to humans. Prey mass spectra, Prey focus masses, and prey class raw data can be used to calculate the CI following Hemmer (2004). Mass estimates were calculated for each species following Van Valkenburgh (1990). Full citations to methodological papers are included as relationships with other resources
keywords:
competition; Southeast Asia; carnivores; humans
published: 2019-12-17
Zhang, Yujie; Araiza Bravo, Rodrigo; Chitambar, Eric; Lorenz, Virginia (2019): Dataset for "Channel Activation of CHSH Nonlocality". University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-3686727_V1
This dataset provides the raw data, code and related figures for the paper, "Channel Activation of CHSH Nonlocality"
keywords:
Super-activation; Non-locality breaking channel
published: 2019-10-16
Sherman, Garrick (2019): TREC document topic annotations. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-9822674_V1
Human annotations of randomly selected judged documents from the AP 88-89, Robust 2004, WT10g, and GOV2 TREC collections. Seven annotators were asked to read documents in their entirety and then select up to ten terms they felt best represented the main topic(s) of the document. Terms were chosen from among a set sampled from the document in question and from related documents.
keywords:
TREC; information retrieval; document topicality; document description
published: 2019-11-12
Rezapour, Rezvaneh (2019): Data for: How do moral values differ in tweets on social movements?. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-9614170_V1
We are sharing the tweet IDs of four social movements: #BlackLivesMatter, #WhiteLivesMatter, #AllLivesMatter, and #BlueLivesMatter movements. The tweets are collected between May 1st, 2015 and May 30, 2017. We eliminated the location to the United States and focused on extracting the original tweets, excluding the retweets. Recommended citations for the data: Rezapour, R. (2019). Data for: How do Moral Values Differ in Tweets on Social Movements?. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-9614170_V1 and Rezapour, R., Ferronato, P., and Diesner, J. (2019). How do moral values differ in tweets on social movements?. In 2019 Computer Supported Cooperative Work and Social Computing Companion Publication (CSCW’19 Companion), Austin, TX.
keywords:
Twitter; social movements; black lives matter; blue lives matter; all lives matter; white lives matter
published: 2019-10-18
Smith, Rebecca (2019): Spatial and Temporal Invasion Dynamics of Aedes albopictus (Diptera: Culicidae) in Illinois. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-7540359_V1
Supporting secondary data used in a manuscript currently in submission regarding the invasion dynamics of the asian tiger mosquito, Aedes albopictus, in the state of Illinois
keywords:
albopictus;mosquito
published: 2019-07-04
Rapti, Zoi (2019): Control of bacterial infections via antibiotic-induced proviruses . University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-9721455_V1
Software (Matlab .m files) for the article: Lying in Wait: Modeling the Control of Bacterial Infections via Antibiotic-Induced Proviruses. The files can be used to reproduce the analysis and figures in the article.
keywords:
Matlab codes; antibiotic-induced dynamics
published: 2019-09-05
Yang, Ning; Gao, Jiarong; Lewis, Fred; Yau, Peter; Collins, James; Sweedler, Jonathan; Newmark, Phillip (2019): Data for A novel rotifer derived alkaloid paralyzes schistosome larvae and prevents infection. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-1599850_V1
The data set here include data from NMR, LC-MS/MS, MALDI-MS, H/D exchange MS experiments used in paper "A novel rotifer derived alkaloid paralyzes schistosome larvae and prevents infection".
published: 2019-09-06
Gallagher, John (2019): NYT vaccine comments. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-7724021_V1
This is a dataset of 1101 comments from The New York Times (May 1, 2015-August 31, 2015) that contains a mention of the stemmed words vaccine or vaxx.
keywords:
vaccine;online comments
published: 2019-08-15
Smith, Rebecca (2019): Mastitis risk effect on the economic consequences of paratuberculosis control in dairy cattle: A stochastic modeling study. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-7539223_V1
Simulation data related to the paper "Mastitis risk effect on the economic consequences of paratuberculosis control in dairy cattle: A stochastic modeling study"
keywords:
paratuberculosis;simulation;dairy
published: 2019-07-27
Clark, Lindsay V.; Dwiyanti, Maria Stefanie; Anzoua, Kossonou G.; Brummer, Joe E.; Glowacka, Katarzyna; Hall, Megan; Heo, Kweon; Jin, Xiaoli; Lipka, Alexander E.; Peng, Junhua; Yamada, Toshihiko; Yoo, Ji Hye; Yu, Chang Yeon; Zhao, Hua; Long, Stephen P.; Sacks, Erik J. (2019): RAD-seq genotypes for a Miscanthus sinensis diversity panel. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-1402948_V1
Genotype calls are provided for a collection of 583 Miscanthus sinensis clones across 1,108,836 loci mapped to version 7 of the Miscanthus sinensis reference genome. Sequence and alignment information for all unique RAD tags is also provided to facilitate cross-referencing to other genomes.
keywords:
variant call format (VCF); sequence alignment/map format (SAM); miscanthus; single nucleotide polymorphism (SNP); restriction site-associated DNA sequencing (RAD-seq); bioenergy; grass
published: 2019-07-26
Buckles, Brittany J; Harmon-Threatt, Alexandra (2019): Data files for "Bee diversity in tallgrass prairies affected by management and its effects on above‐ and below‐ground resources". University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-0016089_V2
Data used in paper published in the Journal of Applied Ecology titled " Bee diversity in tallgrass prairies affected by management and its effects on above- and below-ground resources" Bee Community file contains info on bees sampled in each site. The first column contain the Tallgrass Prairie Sites sampled all additional columns contain the bee species name in the first row and all individuals recorded. Plant Community file contains info on plants sampled in each site. The first column contain the Tallgrass Prairie Sites sampled all additional columns contain the plant species name in the first row and all individuals recorded. Soil PC1 file contains the soil PC1 values used in the analyses. The first column contain the Tallgrass Prairie Sites sampled, the second column contains the calculated soil PC1 values.
keywords:
bee; community; tallgrass prairie; grazing
published: 2019-07-08
Krichels, Alexander (2019): Data For: Iron redox reactions can drive microtopographic variation in upland soil carbon dioxide and nitrous oxide emissions. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-8512100_V1
These files contain the data presented in the manuscript entitles "Iron redox reactions can drive microtopographic variation in upland soil carbon dioxide and nitrous oxide emissions".
keywords:
Iron; redox; carbon dioxide; nitrous oxide; chemodenitrification; Feammox; dissimilatory iron reduction; upland soils; flooding; global change
published: 2018-06-05
Soliman, Aiman; Mackay, Andrew; Schmidt , Arthur; Allan, Brian; Wang, Shaowen (2018): Dataset for: Quantifying the geographic distribution of building coverage across the US for urban sustainability studies. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-4137411_V1
A complete building coverage area dataset (i.e. area occupied by building structures, excluding other built surfaces such as roads, parking lots, and public parks) at the level of census block groups for the contiguous United States (CONUS). The dataset was assembled based on an ensemble prediction of nonlinear hierarchical models to account for spatial heterogeneities in the distribution of built surfaces across different urban communities. Percentage of impervious land and housing density were used as predictors of the estimated area of buildings and cross-validation results showed that the product estimated area represented by buildings with a mean error of 0.049 %.
keywords:
Building Coverage Area; Urban Geography; Regional; Sustainability; US Census Block Groups; CONUS Data
published: 2018-12-31
Tomkin, Jonathan (2018): COPUS observations for NSF WIDER study. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-5634345_V1
Sixty undergraduate STEM lecture classes were observed across 14 departments at the University of Illinois Urbana-Champaign in 2015 and 2016. We selected the classes to observe using purposive sampling techniques with the objectives of (1) collecting classroom observations that were representative of the STEM courses offered; (2) conducting observations on non-test, typical class days; and (3) comparing these classroom observations using the Class Observation Protocol for Undergraduate STEM (COPUS) to record the presence and frequency of active learning practices utilized by Community of Practice (CoP) and non-CoP instructors. Decimal values are the result of combined observations. All COPUS codes listed are from Smith (2013) "The Classroom Observation Protocol for Undergraduate STEM (COPUS): A New Instrument to Characterize STEM Classroom Practices" paper. For more information on the data collection process, see "Evidence that communities of practice are associated with active learning in large STEM lectures" by Tomkin et. al. (2019) in the International Journal of STEM Education.
keywords:
COPUS, Community of Practice
published: 2019-05-07
Detmer, Thomas; Wahl, David (2019): Trophic cascade strength is influenced by size frequency distribution of primary consumers and size-selective predation: examined with mesocosms and modeling. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-3292716_V1
Data set of trophic cascade in mesocosms experiments for zooplankton (biomass and body size) and phytoplankton (chlorophyll a concentration) caused by Bluegill as well as zooplankton production in those same treatment groups. Zooplankton were collected by tube sampler and phytoplankton were collected through grab samples.
keywords:
Trophic cascades; size-selective predation; compensatory mechanisms; biomanipulation; invasive fish; Daphnia; Moina
published: 2019-05-16
Detmer, Thomas (2019): Influences of fish on food web structure and function in mountain lakes supplemental data. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-5372808_V1
The associated data sets include information on stable isotopes from organic matter sources in high elevation lakes, the percentage of production assimilated from the different sources of organic matter, and the relationship between different metrics for trophic position and environmental variables.
keywords:
Stable isotopes; macroinvertebrate production; trophic position
published: 2019-04-05
Dong, Xiaoru; Xie, Jingyi; Hoang, Linh (2019): Inclusion_Criteria_Annotation. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-5958960_V2
File Name: Inclusion_Criteria_Annotation.csv Data Preparation: Xiaoru Dong Date of Preparation: 2019-04-04 Data Contributions: Jingyi Xie, Xiaoru Dong, Linh Hoang Data Source: Cochrane systematic reviews published up to January 3, 2018 by 52 different Cochrane groups in 8 Cochrane group networks. Associated Manuscript authors: Xiaoru Dong, Jingyi Xie, Linh Hoang, and Jodi Schneider. Associated Manuscript, Working title: Machine classification of inclusion criteria from Cochrane systematic reviews. Description: The file contains lists of inclusion criteria of Cochrane Systematic Reviews and the manual annotation results. 5420 inclusion criteria were annotated, out of 7158 inclusion criteria available. Annotations are either "Only RCTs" or "Others". There are 2 columns in the file: - "Inclusion Criteria": Content of inclusion criteria of Cochrane Systematic Reviews. - "Only RCTs": Manual Annotation results. In which, "x" means the inclusion criteria is classified as "Only RCTs". Blank means that the inclusion criteria is classified as "Others". Notes: 1. "RCT" stands for Randomized Controlled Trial, which, in definition, is "a work that reports on a clinical trial that involves at least one test treatment and one control treatment, concurrent enrollment and follow-up of the test- and control-treated groups, and in which the treatments to be administered are selected by a random process, such as the use of a random-numbers table." [Randomized Controlled Trial publication type definition from https://www.nlm.nih.gov/mesh/pubtypes.html]. 2. In order to reproduce the relevant data to this, please get the code of the project published on GitHub at: https://github.com/XiaoruDong/InclusionCriteria and run the code following the instruction provided. 3. This datafile (V2) is a updated version of the datafile published at https://doi.org/10.13012/B2IDB-5958960_V1 with some minor spelling mistakes in the data fixed.
keywords:
Inclusion criteri; Randomized controlled trials; Machine learning; Systematic reviews
published: 2019-03-05
Zhao, Jifu (2019): UIUC Campus Gamma-Ray Radiation Data. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-9119873_V1
This dataset contains the raw nuclear background radiation data collected in the engineering campus of University of Illinois at Urbana-Champaign. It contains three columns, x, y, and counts, which corresponds to longitude, latitude, and radiation count rate (counts per second). In addition to the original background radiation data, there are several separate files that contain the simulated radioactive sources. For more detailed README file, please refer to this documentation: <a href= "https://www.dropbox.com/s/xjhmeog7fvijml7/README.pdf?dl=0">https://www.dropbox.com/s/xjhmeog7fvijml7/README.pdf?dl=0</a>
keywords:
Nuclear Radiation
published: 2019-03-06
Anderson, Nicholas L.; Harmon-Threatt, Alexandra N. (2019): Chronic contact with realistic soil concentrations of imidacloprid affects the mass, immature development speed, and adult longevity of solitary bees. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-9033534_V1
Chronic contact exposure to realistic soil concentrations (0, 7.5, 15, and 100 ppb) of the neonicotinoid pesticide imidacloprid had species- and sex-specific effects on bee adult longevity, immature development speed, and mass. This dataset contains a life table tracking the development, mass, and deaths of a single cohort of Osmia lignaria and Megachile rotundata over the course of two summers. Other data files include files created for multi-event survival analysis to analyze the effect on development speed. Detected effects included: decreased adult longevity for female O. lignaria at the highest concentration, a trend for a hormetic effect on female M. rotundata development speed and mass (longest development time and greatest mass in the 15 ppb treatment), and decreased adult longevity and increased development speed at high imidacloprid concentrations as well as a hormetic effect on mass (lowest in the 15 ppb treatment treatment) on male M. rotundata.
keywords:
neonicotinoid; imidacloprid; bee; habitat restoration;
published: 2019-02-02
Lovell, Sarah (2019): Bee visitation for PLOS ONE manuscript. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-6066174_V1
The bee visitation data includes the percentage of each bee pollinator group in bee bowls and observed. The data are referenced in the article with the following citation: Bennett, A.B., Lovell, S.T. 2019. Landscape and local site variables differentially influence pollinators and pollination services in urban agricultural sites. Accepted for publication in: PLOS ONE.
published: 2019-02-02
Lovell, Sarah (2019): Site attributes for PLOS ONE article. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-7869554_V1
Landscape attributes of the nineteen sites as supplemental data for the following article: Bennett, A.B., Lovell, S.T. 2019. Landscape and local site variables differentially influence pollinators and pollination services in urban agricultural sites. Accepted for publication in: PLOS ONE.