Illinois Data Bank Dataset Search Results
Results
published:
2025-05-15
Macleod, Brandi M.; Wilkins, Pamela A.; McCoy, Annette; Bishop, Rebecca C.
(2025)
Coagulation testing (VCM Vet™) was performed on 57 horses with acute abdominal pain at admission to the University of Illinois Veterinary Teaching Hospital. Additional clinical data were recorded retrospectively. ROC analysis was performed to determine the optimal number of abnormal coagulation parameters for coagulopathy diagnosis based on survival. General linear regression (GLM) and random forest (RF) classification models were developed to predict short-term survival. A training cohort of 40 horses was used for model development, and model performance was determined using the remaining 17 horses.
keywords:
horse; coagulation; colic; abdominal pain; survival; machine learning; blood clotting; viscoelastic testing
published:
2022-03-30
Tiemann, Jeremy S.; Stodola, Alison P.; Douglass, Sarah A.; Vinsel, Rachel M.; Cummings, Kevin S.
(2022)
This dataset is associated with a larger manuscript published in 2022 in the Illinois Natural History Survey Bulletin to summarize all known records for nonindigenous aquatic mollusks in Illinois, and full sources are referenced within the manuscript. We examined museum holdings, literature accounts, publicly available databases sponsored by the U.S. Geological Survey (USGS) - Nonindigenous Aquatic Species program (http://nas.er.usgs.gov/.) and InvertEBase (invertebase.org). We also included sporadic field survey data of encounters of nonindigenous aquatic species from colleagues within the Illinois Natural History Survey, Illinois Department of Natural Resources, U.S. Fish and Wildlife Service, county forest preserve districts, and other natural resource agencies about their encounters with nonindigenous aquatic mollusk species. Lastly, we examined the role and utility of citizen-science data to document occurrences of nonindigenous aquatic mollusk species. We queried iNaturalist (www.inaturalist.org) for all available nonindigenous freshwater mollusk data for Illinois.
Table heading descriptions (if not intuitive) are: “INHS verified” is whether an INHS staff member verified the record by observing vouchered specimen or photograph; “Source” is where a record was accessed or obtained; “individualCount” is number collected or observed in a record; “MuseumCode” is standard museum abbreviation or acronym; “Institution” is source that housed or reported a record, and this also includes the spelled-out museum code; “Collectors” typically indicates who collected the specimen or voucher; “Lat_Long determined by” denotes whether collection coordinates were stated by the collector or by a curator (using inference from data available); “fieldNumber” typically indicates a unique field number that a collector may have used in the field; “identifiedBy” typically explains who identified a specimen or verified a specimen identification.
keywords:
Illinois; Exotic species; Non-native aquatic species; NAS; Aquatic Invasive Species; AIS; Mollusk
published:
2024-10-16
Smith, Rebecca; Huang, Conghui
(2024)
School testing data were provided by Shield Illinois (ShieldIL), which conducted weekly in-school testing on behalf of the Illinois Department of Public Health (IDPH) for all participating schools in the state excluding Chicago Public Schools. The populations and proportions of students and employees in the studied school districts are reported by Elementary/Secondary Information System (ElSi) database.
keywords:
COVID-19; school testing
published:
2024-04-15
Belmont, Andrew; Gholamalamdari, Omid; Kumar, Pradeep
(2024)
The immunofluorescence and segmented images of three nuclear locales, (nuclear periphery, nuclear speckles, and nucleolus) in four human cells lines (H1-hESC, HCT116, HFFc6, and K562). For each of the cell lines, this dataset includes original, cropped, and binary 4D images (3D + antibody) in addition to max projected thumbnails of cell nuclei.
keywords:
microscopy; immunostaining; segmentation; human nuclei
published:
2024-12-20
Stuchiner, Emily; Xu, Jiacheng; Eddy, William C.; DeLucia, Evan H.; Yang, Wendy
(2024)
All data presented in the manuscript published in the Journal of Geophysical Research-Biogeosciences by Stuchiner et al. 2025, "Hot or not? An evaluation of methods for identifying hot moments of nitrous oxide emissions from soils." This includes hourly N2O flux measurements from 20 autochambers from May 2022 to April 2023 in a maize field in central Illinois, and various metrics used to assess hot moments that are evaluated in the manuscript. Note that chamber 5 for each sampling node is sampled from a deep soil collar (50 cm depth) that excludes roots for the purpose of measuring heterotrophic respiration rates.
keywords:
nitrous oxide; maize; hot moments; outlier detection; soil emissions
published:
2024-06-11
This dataset contains weather data taken at the University of Illinois Urbana-Champaign Energy Farm using automatic sensors and averaged every 15 minutes. Measurements include average air temperature, average relative humidity, average wind speed, maximum wind speed, average wind direction, average photosynthetically active radiation, total precipitation, and average air pressure.
keywords:
air temperature; relative humidity; wind speed; wind direction; photosynthetically active radiation; precipitation; air pressure
published:
2023-12-19
Bush, Daniel; Calla, Bernarda; Berenbaum, May
(2023)
Data for the Appendices of Bush et al. article published in Ecology and Evolution. Contains genomic analysis information for a strain of Aspergillus flavus isolated from bee bread in East Central Illinois.
keywords:
Excel; UIUC; Evolution and Ecology; Aspergillus flavus; genome
published:
2024-07-12
Tejeda-Lunn, Daniel; Kannan, Baskaran; Germon, Amandine; Leverett, Alistair; Clemente, Tom; Altpeter, Fredy; Leakey, Andrew
(2024)
Data for each figure of the article "Greater aperture counteracts effects of reduced stomatal density on WUE: a case study on sugarcane and meta-analysis" published in J. Ex. Bot.
keywords:
stomatal density; water use efficiency; stomatal conductance; epidermal patterning factor; epidermal patterning
published:
2025-10-18
Rodriguez Zas, Sandra
(2025)
Metadata and RNA-seq FASTQ files. The metadata describes the experimental design and relationship between the FASTQ files and the sex and morphine treatment groups. The FASTQ files include the paired-end sequence reads for each sample.
keywords:
RNA-seq, morphine, sex, hypothalamus
published:
2018-08-03
Kim, Eun Sun; Zaya, David N.; Fant, Jeremie B.; Ashley, Mary V.
(2018)
These data include information on a field experiment on Castilleja coccinea (L.) Spreng., scarlet Indian paintbrush (Orobanchaceae). There is intraspecific variation in scarlet Indian paintbrush in the color of the bracts surrounding the flowers. Two bract color morphs were included in this study, the scarlet and yellow morphs. The experiment was conducted at Illinois Beach State Park in 2012. The aim of the work was to compare the color morphs with regard to 1) self-compatibility, 2) response to pollinator exclusion, 3) cross-compatibility between the color morphs, and 4) relative female fertility and male fitness.
Three files are attached with this record. The raw data are in "fruitSet.csv" and "seedSet.csv", while "readme.txt" has detailed explanations of the raw data files.
keywords:
Castilleja coccinea; Orobanchaceae; floral color polymorphism; bract color polymorphism; breeding system; hand-pollination; self-compatibility; reproductive assurance
published:
2024-06-27
Han, Hee-Sun ; Schrader, Alex; Lee, JuYeon
(2024)
U-2 OS MERFISH data set prepared by the Han lab at UIUC based off of procedures developed in Moffitt et al. Proc. Natl. Acad. Sci. USA 113 (39), 11046–11051.
Data is comprised of ~2 million spots from 130 genes with x,y,z location, cell assignment, and correction status.
keywords:
smFISH; single transcript spatial transcriptomics; U-2 OS; Cancer cell line; MERFISH
published:
2023-12-15
Abidi, Syeda Nayab; Hsu, Felicity; Smith-Bolton, Rachel
(2023)
This page contains the data for the publication "Regenerative growth is constrained by brain tumor to ensure proper patterning in Drosophila" published in PLOS Genetics in 2023.
published:
2023-12-18
Johnson, Claire A.; Benson, Thomas J.
(2023)
Data in this publication were used to examine the effects of habitat and landscape-level covariates on occupancy and interannual dynamics and the effects of environmental factors on detection of Black-billed Cuckoos and Yellow-billed Cuckoos. Data were collected between 2019-2020 in northern Illinois, USA. Procedures were approved by the Illinois Institutional Animal Care and Use Committee (IACUC), protocol no. 19086.
keywords:
Black-billed Cuckoo; habitat use; multi-scale; occupancy dynamics; turnover; Yellow-billed Cuckoo
published:
2018-01-13
Miao, Guofang; Guan, Kaiyu
(2018)
This dataset provides the time series (Aug. - Sep. 2016) data of sun-induced chlorophyll fluorescence, photosynthesis, photosynthetically active radiation, and associated vegetation indices that were collected in a soybean field in the farm of University of Illinois at Urbana and Champaign.
Data contain 255 records and 6 variables (PPFD-IN: Photosynthetically active radiation; GPP-Gross Primary Production; SIF: Sun-Induced Fluorescence; NDVI: Normalized Difference Vegetation Index; Rededge: Rededge Index; Redege_NDVI: Rededge Normalized Difference Vegetation Index). The timestamp uses the standard time. Data are available from 8 am to 4 pm (corresponding to 9 am to 5 pm local time) every day.
keywords:
sun-induced chlorophyll fluorescence; photosynthesis; soybean
published:
2020-06-30
Chakraborty, Sulagna; Cristina Drumond Andrade , Flavia; Lee Smith, Rebecca
(2020)
This file contains 13 unique case studies that were created for the One health: Infectious diseases course offered at the University of Illinois at Urbana-Champaign campus. The case studies are being made available as educational resources for other One health courses. Each case study is focused on a theme/topic which is associated with One health. These case studies were created using publicly available information and references have been provided for each case study.
keywords:
One health education; infectious diseases; case studies
published:
2022-07-22
Johnson, Claire A.; Benson, Thomas J.
(2022)
Data in this publication were used to examine the effects of environmental and temporal covariates on detection probability, and the effects of habitat and landscape level covariates on occupancy and within season turnover of Black-billed Cuckoos and Yellow-billed Cuckoos. Data were collected between 2019-2020 in northern Illinois, USA. Procedures were approved by the Illinois Institutional Animal Care and Use Committee (IACUC), protocol no. 19086.
keywords:
Black-billed Cuckoo; call broadcast; Coccyzus americanus; Coccyzus erythropthalmus; detection probability; occupancy dynamics; rare and secretive species; Yellow-billed Cuckoo
published:
2025-04-01
Getahun, Elias; Zavelle, Atticus; Keefer, Laura
(2025)
ICoastalDB, which was developed using Microsoft structured query language (SQL) Server, consists of water quality and related data in the Illinois coastal zone that were collected by various organizations. The information in the dataset includes, but is not limited to, sample data type, method of data sampling, location, time and date of sampling and data units.
keywords:
Illinois Coastal Zone; Water Quality Data
published:
2021-02-25
Ferin, Kelsie; Chen, Luoye; Zhong, Jia; Heaton, Emily; Khanna, Madhu; VanLoocke, Andy
(2021)
Total nitrogen leaching rates were calculated over the Mississippi Atchafalaya River Basin (MARB) using an integrated economic-biophysical modeling approach. Land allocation for corn production and total nitrogen application rates were calculated for crop reporting districts using the Biofuel and Environmental Policy Analysis Model (BEPAM) for 5 RFS2 policy scenarios. These were used as input in the Integrated BIosphere Simulator-Agricultural Version (Agro-IBIS) and the Terrestrial Hydrologic Model with Biogeochemistry (THMB) to calculate the nitrogen loss.
Land allocation and total nitrogen application simulations were simulated for the period 2016-2030 for 303 crop reporting districts (https://www.nass.usda.gov/Data_and_Statistics/County_Data_Files/Frequently_Asked_Questions/county_list.txt). The final 2030 values are reported here. Both are stored in csv files. Units for land allocation are million ha and nitrogen application are million kg.
The nitrogen leaching rates were modeled with a spatial resolution of 5' x 5' using the North American Datum of 1983 projection and stored in NetCDF files. The 30-year average is calculated over the last 30 years of the 45 years being simulated. Leaching rates are calculated in kg-N/ha.
keywords:
nitrogen leaching, bioethanol, bioenergy crops
published:
2024-09-26
Kamara, Shasta; Hay, Allison; Oller, Reagan; Suski, Cory
(2024)
This dataset is from a study of a simulated angling tournament livewell holding in June of 2023 on Largemouth Bass (Micropterus nigricans) on Clinton Lake, Illinois. Fish were collected via electrofishing, weighed, measured and assessed for physical injury prior to receiving a commercially available cull tag and being placed in a simulated livewell. After a six hour livewell holding period, fish were removed from the livewell assessed for physical injury and then assessed for reflex action mortality predictors prior to being placed in a net pen for 3 days of observation. This dataset includes, weights, total lengths, physical injury scores, and reflex action mortality predictor scores for Largemouth Bass and water quality parameters of livewells and the lake in net pens.
keywords:
sport fish conservation; fisheries management; high-grading; stringer
published:
2024-07-22
Ferguson, John; Schumuker, Peter; Dmitrieva, Anna; Quach, Truyen; Zhang, Tieling; Ge, Zhengxiang; Nersesian, Natalya; Sato, Shirley; Clemente, Thomas; Leakey, Andrew
(2024)
Raw data for the results presented in Ferguson et al 2024.
keywords:
Sorghum bicolor; stomata; stomatal conductance; C4 photosynthesis; water-use efficiency; drought
published:
2021-06-14
Anderson, Nicholas L.; Harmon-Threatt, Alexandra N.
(2021)
Chronic contact exposure to realistic soil concentrations (0, 7.5, 15, and 100 ppb) of the neonicotinoid pesticide imidacloprid had species- and sex-specific effects on adult bee movement characteristics, but not on adult female bee brain development. This dataset contains two data files. The first contains information about adult bee movement characteristics for female Osmia lignaria and female and male Megachile rotundata over a 10-minute trial (total distance traveled and average movement speed). The second contains information about female Osmia lignaria and Megachile rotundata adult brain morphology. Detected effects included: female Osmia lignaria adults moved faster as they aged in the 0 and 7.5 ppb, but not in the 15 or 100 ppb, groups; young male Megachile rotundata adults moved more quickly (7.5 and 100 ppb) and farther (100 ppb) when treated with imidacloprid compared to the control group (0 ppb); and, while there was no impact of imidacloprid on adult female neuropil:Kenyon cell volume (N:K), N:K decreased with Osmia ligaria adult age and increased with Megachile rotundata adult age.
keywords:
neonicotinoid; imidacloprid; bee; movement
published:
2025-08-05
Carrica, Lauren; Gulley, Joshua M.
(2025)
This dataset includes all data used in the manuscript by Carrica and Gulley titled, "Ontogeny of catechol-o-methyltransferase expression in the rat prefrontal cortex: effects of methamphetamine exposure"
keywords:
dopamine clearance; adolescence; drug exposure; prefrontal cortex
published:
2022-08-22
Pastrana-Otero, Isamar; Majumdar, Sayani; Kraft, Mary L.
(2022)
This dataset contains Raman spectra, each acquired from an individual, living, primary murine cell belonging to one of the six most immature hematopoietic cell populations found in the body: hematopoietic stem cell (HSC), mutipotent progenitor 1 (MPP1), multipotent progenitor 2 (MPP2), multipotent progenitor 3 (MPP3), common lymphoid progenitor, common myeloid progenitor (CLP). These spectra are useful for identifying spectral signatures that are characteristic of each hematopoietic stem or early progenitor cell population.
*NOTE: __MACOSX folder and files start with “._[file name]” found in "Raman spectra of single cells text files.zip" were created by the computer operation system, in unreadable format, which are not part of the data and can be removed/ignored when using the data.
keywords:
Raman spectroscopy; single-cell spectrum; hematopoietic cell; hematopoietic stem cell; multipotent progenitor cell; common myeloid progenitor; common lymphoid progenitor
published:
2022-12-11
The data are original electron micrographs from the lab of the late Dr. Burt Endo of the USDA. These data were digitized from photographic prints and glass plate negatives at 600 DPI as 16 bit TIFF files. This fourth version added 6 new ZIP files from the Endo data collection. "Endo folder database.xlsx" is updated to reflect the addition. Information in "Readme_FileNameFormatting.docx" remains the same as in V3.
keywords:
Heterodera glycines; Meloidogyne incognita; Burt Endo; nematode