Dataset Search

These show the topography and relief of the Precambrian surface of the Cratonic Platform of the United States.

The data files are for the paper entitled: Melting of the charge density wave by generation of pairs of topological defects in UTe2 to be published in Nature Physics. The data was obtained on a 300 mK custom designed Unisoku scanning tunneling microscope using the Nanonis module. All the data files have been named based on the Figure numbers that they represent.

This dataset is about a topographic LIDAR survey (saved in “waxlake-lidar.img”) that was conducted over the Wax Lake delta, between longitudes −91.5848 to −91.292 degrees, and latitudes 29.3647 to 29.6466 degrees. Different from other elevation data, the positive value in the LIDAR data indicates land elevation, while the zero value implies riverbed without identifying specific water depth.

Hepatic profiling of metabolites in the liver of female and male pigs exposed to the effects of distress

This data set includes the cochlear implant (CI) electrodograms recorded in 2 different acoustic conditions using acoustic head KEMAR. It is a part of a study intended to explore the effect of interaural asymmetry on interaural coherence after CI processing.

This dataset contains temperature measurements in four different bat box designs deployed in central Indiana, USA from May to September 2018. Hourly environmental data (temperature, solar radiation, and wind speed) are also included for days and hours sampled. Bat box temperature data were used as inputs in a free program, GNU Octave, to assess design performance with respect to suitability indices for endothermic metabolism and pup development. Scripts are included in the dataset.

The dissertation_demo.zip contains the base code and demonstration purpose for the dissertation: A Conceptual Model for Transparent, Reusable, and Collaborative Data Cleaning. Each chapter has a demo folder for demonstrating provenance queries or tools. The Airbnb dataset for demonstration and simulation is not included in this demo but is available to access directly from the reference website. Any updates on demonstration and examples can be found online at: https://github.com/nikolausn/dissertation_demo

Data for the invertebrate analysis in chapter 2 of Jacob Ridgway's thesis: "Neonicotinoids and Fungicides Alter Soil Invertebrate Abundance and Richness Within Restored Prairie"

This dataset is the field measurements of water depth at the Wax Lake delta on the date 2012-12-01.

Complete soils dataset for the La Planada forest dynamics plot associated with publication: John et al. (2007) "Soil nutrients influence the spatial distributions of tropical tree species" PNAS 104:864-869 www.pnas.org/cgi/doi/10.1073/pnas.0604666104

Survey questions and data collected from Illinois land managers on practices and knowledge relating to impacts to wildlife. 0s indicated non-selection, 1s indicate selection of answer.

A two-year field study was conducted to test the hypothesis that biochar application increases inorganic soil N availability during maize growth, leading to higher grain yields and N recovery efficiency while reducing the risk of N leaching following harvest. Four N fertilizer rates (0, 90, 179, and 269 kg ha-1 as urea ammonium nitrate solution) were applied with or without biochar (10 Mg ha-1) before maize planting each year. This dataset contains selected summary statistics (average and standard deviation) on soil and plant measurements. This file package also includes a readme.txt file that describes the data in detail, including attribute descriptions.

This dataset accompanies an article published in the journal Bioacoustics: "Tradeoffs in sound quality and cost for passive acoustic devices", https://doi.org/10.1080/09524622.2023.2290715. The dataset contains measurements for acoustic call files for free-flying bats simultaneously recorded on both Audiomoth and Anabat Swift passive acoustic recording devices in a conservation area in northeastern Missouri, USA. We paired calls from the two devices and compared indicators of recording quality measured in a proprietary program (Bat Call Identification Software). The dataset also contains a file enumerating the proportions of calls classified as low frequency, mid frequency, or Myotis (three phonic groups) for each type of recording device. The data were used to compare the quality and sensitivity of the two devices. The scripts for modeling procedures and figures are included in the dataset.

Simulation trajectory data and scripts for Nature manuscript "The structure and physical properties of a packaged bacteriophage particle" that reports the all-atom structure of a complete HK97 virion, including its entire 39,732 base pair genome, obtained through multi-resolution simulations.

This page contains the data for the publication "Revisiting bacterial cytolethal distending toxin structure and function" published in Frontiers in Cellular and Infection Microbiology in 2023.

This datasets provide basis of our analysis in the paper - Potential Impacts on Ozone and Climate from a Proposed Fleet of Supersonic Aircraft. All datasets here can be categorized into emission data and model output data (WACCM). All the model simulations (background and perturbation) were run to steady-state and only the datasets used in analysis are archived here.

There are two files in this dataset. File1: AffiNorm AffiNorm contains 1,001 rows, including one header row, randomly sampled from MapAffil 2018 Dataset ([**https://doi.org/10.13012/B2IDB-2556310_V1**](https://databank.illinois.edu/datasets/IDB-2556310)). Each row in the file corresponds to a particular author on a particular PubMed record, and contains the following 26 columns, comma-delimited. All columns are ASCII, except city which contains Latin-1. COLUMN DESCRIPTION 1. PMID: the PubMed identifier. int. 2. ORDER: the position of the author. int. 3. YEAR - The year of publication. int(4), eg: 1975. 4. affiliation - affiliation string of the author. eg: Department of Pathology, University of Chicago, Illinois 60637. 5. annotation_type: the number of institutions annotated, denoted by S, M, O, or Z, where "S" (single) indicates 1 institution was annotated; "M" (Multiple) indicates more than one institutions were annotated; "O" (Out of Vocabulary or None) indicates no institution was annotated, but an institution was apparently mentioned; "Z" indicates no institution was mentioned. 6. Institution: the standard name(s) of the annotated institution(s), according to ROR. if "S" (single institution), it is saved as a string, eg: University of Chicago; if "M", it is saved as a string that looks like a python list, eg: ['Public Health Laboratory Service'; 'Centre for Applied Microbiology and Research']; if "O" or "Z", then blank. 7. inst_type: the type of institution, according to ROR. the potential values are: education, funder, healthcare, company, archive, nonprofit, government, facility, other. An institution may have more than one type, eg: ['Education', 'Funder'] 8. type_edu: TRUE if the inst_type contains "Education"; FALSE otherwise. 9. RORid: ROR identifier(s), eg: https://ror.org/05hs6h993. when multiple, the order corresponds to institution (column 6) 10. RORid_label. the standard name(s) of the annotated institution(s) according to ROR.same as institution (column 6) 11. GRIDid: GRID identifier(s). eg: grid.170205.1 12. GRIDid_label: the standard name(s) of the annotated institution(s) according to GRID. eg: University of Chicago. 13. WikiDataid: WikiData identifier(s). eg: Q131252 14. WikiDataid_label: the standard name(s) of the annotated institution(s) according to WikiData. eg: University of Chicago 15. synonyms: a comma separated list of variant names from InsVar (file 2) . format of string. eg: University of Chicago, Chicago University, U of C, UChicago, uchicago.edu, U Chicago, ... 16. MapAffil-grid: GRID from the MapAffil 2018 Dataset. 17. MapAffil-grid_label: The standard name of institution from MapAffil 2018 Dataset. 18. judge_mapA: TRUE if GRIDid (column 11) contains MapAffil-grid (column 16); FALSE otherwise. 19. MapAffiltemporal-grid: GRID from the temporal version of MapAffil, http://abel.ischool.illinois.edu/data/MapAffilTempo2018.tsv.gz 20. MapAffiltemporal-grid_label: The standard name of institution from MapAffilTemporal 2018 Dataset. 21. judge_mapT: TRUE if GRIDid (column 11) contains MapAffiltemporal-grid (column 19); FALSE otherwise. 22. RORapi_query_id: ROR from ROR api tool (query endpoint) 23. RORapi_query_id_label: The standard name of institution from ROR api tool (query endpoint). format in string. 24. judge_rorapi_affiliation: TRUE if RORid (column 9) contains RORapi_query_id (column 22); FALSE otherwise. 25. rorapi_affiliation_id: ROR from ROR api tool (affiliation endpoint). 26. judge_rorapi_affiliation: TRUE if RORid (column 9) contains RORapi_affiliation (column 25); FALSE otherwise. File 2: insVar.json InsVar is a supplementary dataset for AffiNorm, which includes the institution ID and its redirected aliases from wikidata. The institution ID list is from GRID, the redirected aliases are from wiki api, for example: https://en.wikipedia.org/wiki/Special:WhatLinksHere?target=University+of+Illinois+Urbana-Champaign&namespace=&hidetrans=1&hidelinks=1&limit=100 In InsVar, the data is saved in a python dictionary format. the key is the GRID identifier, for example: "grid.1001.0" (Australian National University), and the value is a list of redirected aliases strings. {"grid.1001.0": ["ANU", "ANU College", "ANU College of Arts and Social Sciences", "ANU College of Asia and the Pacific", "ANU Union", "ANUSA", "Asia Pacific Week",    "Australia National University", "Australian Forestry School", "the Australian National University", ...], "grid.1002.3": ...}

Enzymatic reduction of oxyanions such as sulfite (SO32−) requires the delivery of multiple electrons and protons, a feat accomplished by cofactors tailored for catalysis and electron transport. Replicating this strategy in protein scaffolds may expand the range of enzymes that can be designed de novo. Mirts et al. selected a scaffold protein containing a natural heme cofactor and then engineered a cavity suitable for binding a second cofactor—an iron-sulfur cluster (see the Perspective by Lancaster). The resulting designed enzyme was optimized through rational mutation into a catalyst with spectral characteristics and activity similar to that of natural sulfite reductases.

This is an Excel file containing data about the physical environments of four Brazilian schools and the average daily minutes/day of physical activity and sedentary behavior exhibited by schoolchildren during school hours. The Following Key describes the basic variables: Subject IDs and Characteristics Subject_ID: ID of Subject total_days: Total number of days subject participated in experiment Gender : Gender of subject Age: Age of subject School IDs and Characteristics ID_School = ID of School school1 = 1 if ID_School = 1, else = 0 school2 = 1 if ID_School = 2, else = 0 school3 = 1 if ID_School = 3, else = 0 school4 = 1 if ID_School = 4, else = 0 TotalSiteArea: Total Site Area on School Campus PatioArea: Area of Patio(s) CourtyardArea: Area of Courtyard(s) TotalOpenArea: Total Area of Open Spaces on Campus Class: Number of Sections in the School Population: Total Number of Students Enrolled in the School

This dataset contains all data and supplementary materials from "Improving precision and accuracy of genetic mapping with genotyping-by-sequencing data in outcrossing species". An Excel file a list of all QTLs and linkage group length (in cM) obtained with two different SNP-calling methods (Tassel-Uneak and Tassel-GBS), genetic map-construction method (linkage-only and reference order-corrected) and depth filters (12x, 20x, 30x and 40x) for genetic mapping of 18 biomass yield traits in a biparental Miscanthus sinensis population using RAD-Seq SNPs is provided as "Supplementary file 1". A Perl script with the code for filtering VCF and HapMap-formatted data files is provided as “Supplementary file 2”. Phenotype data used for QTL mapping is provided as “Supplementary File 3”. A Perl script with the code for the simulation study is provided as “Supplementary file 4”.

SCiLS MSI data files, images used in the figures and table contents for the tables found in the manuscript. The figures are labeled by figure and by their title on each figure set, including those found in the Supplementary Information. The tables are in an MS Excel sheet with the corresponding contents. The tables list the metabolites found in the images. To reduce the number of images in the manuscript, the tables complete the metabolite information not observed in the images. The images can be found using the SCiLS data files. A software license is needed to open these files. The SCiLS data files contains the processed MSI data for all obtained images. All files in the corresponding SCiLS data file must be present to open the individual data file. The feature list used for MSI analysis should be saved on the attached bookmark inside the SCiLS file so it should be available once the file is opened. SCiLS files can only be opened with the Bruker SCiLS software. If using an outdated version (before Version 13.01.17218), the files may not open or show poor quality.

Bioenergy crops have potential for being a sustainable and renewable feedstock for biofuels and various value-added bioproducts. The study utilizes recently developed transgenic sugarcane (“oilcane”) bagasse for chemical-free coproduction of high-value bioproducts, i.e., furfurals, HMF, acetic acid, cellulosic sugars, and vegetative lipids. Hydrothermal pretreatment was optimized at 210 °C for 5 min to coproduce 6.91%, 2.67%, 5.07%, 2.42% and 37.82% (w/w) furfurals, HMF, acetic acid, vegetative lipids, and cellulosic sugars, respectively from lignocellulosic biomass. Additionally, nanofiltration system in-series was successfully established to recover sugars, furfurals, HMF, and acetic acid from the pretreatment liquor. 1st nanofiltration with Duracid NF membrane rejected ∼99% sugars. Concentrated sugars with significantly reduced inhibitory products were obtained in retentate for fermentation. 2nd nanofiltration with NF90 membrane used permeate of 1st nanofiltration as feed and rejected ∼ 86% furfurals. The work demonstrates the feasibility of coproducing and recovering multiple biochemicals from lignocellulosic biomass.

Data for the publication of Magnetic Fields in the Pillars of Creation (Sarkar et al.). Contains the fits files and python scripts.

This dataset provides microhabitat and environmental variables collected in the habitat of the poison frog Mantella baroni from 155 1-meter square quadrats in Vohimana Reserve along forest valleys, on slopes, and on ridgelines. We also provide data from photographic capture-recapture surveys used for estimating abundance.