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Illinois Data Bank Dataset Search Results
Dataset Search Results
published: 2023-12-06
Starbuck, Clarissa; DeSchepper, Logan; Hoggatt, Meredith; O'Keefe, Joy (2023): Data for Tradeoffs in sound quality and cost for passive acoustic devices. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-4200947_V1
This dataset accompanies an article published in the journal Bioacoustics: "Tradeoffs in sound quality and cost for passive acoustic devices", https://doi.org/10.1080/09524622.2023.2290715. The dataset contains measurements for acoustic call files for free-flying bats simultaneously recorded on both Audiomoth and Anabat Swift passive acoustic recording devices in a conservation area in northeastern Missouri, USA. We paired calls from the two devices and compared indicators of recording quality measured in a proprietary program (Bat Call Identification Software). The dataset also contains a file enumerating the proportions of calls classified as low frequency, mid frequency, or Myotis (three phonic groups) for each type of recording device. The data were used to compare the quality and sensitivity of the two devices. The scripts for modeling procedures and figures are included in the dataset.
keywords:
Bats; echolocation; passive acoustic monitoring; sensors
published: 2023-12-08
Preza Fontes, Giovani; Greer, Kristin; Pittelkow, Cameron (2023): Data for Does biochar increase nitrogen use efficiency in maize?. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-8987372_V1
A two-year field study was conducted to test the hypothesis that biochar application increases inorganic soil N availability during maize growth, leading to higher grain yields and N recovery efficiency while reducing the risk of N leaching following harvest. Four N fertilizer rates (0, 90, 179, and 269 kg ha-1 as urea ammonium nitrate solution) were applied with or without biochar (10 Mg ha-1) before maize planting each year. This dataset contains selected summary statistics (average and standard deviation) on soil and plant measurements. This file package also includes a readme.txt file that describes the data in detail, including attribute descriptions.
keywords:
biochar; nitrogen fertilizer; nitrogen use efficiency; corn yield, soil inorganic nitrogen; nitrate leaching
published: 2023-03-24
Zhang, Jun (2023): Potential Impacts on Ozone and Climate from a Proposed Fleet of Supersonic Aircraft. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-0038951_V1
This datasets provide basis of our analysis in the paper - Potential Impacts on Ozone and Climate from a Proposed Fleet of Supersonic Aircraft. All datasets here can be categorized into emission data and model output data (WACCM). All the model simulations (background and perturbation) were run to steady-state and only the datasets used in analysis are archived here.
keywords:
NetCDF; Supersonic aircraft; Stratospheric ozone; Climate
published: 2023-07-05
Dalling, James William; Norden, Natalia (2023): La Planada Forest Dynamics Plot soils dataset. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-6140727_V1
Complete soils dataset for the La Planada forest dynamics plot associated with publication: John et al. (2007) "Soil nutrients influence the spatial distributions of tropical tree species" PNAS 104:864-869 www.pnas.org/cgi/doi/10.1073/pnas.0604666104
keywords:
tropical forest soil; montane forest; cation availability; spatial distribution of tree species
published: 2024-02-25
Coshic, Kush; Maffeo, Christopher; Winogradoff, David; Aksimentiev, Aleksei (2024): Select trajectories, simulation setup, and analysis for "The structure and physical properties of a packaged bacteriophage particle". University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-4930709_V1
Simulation trajectory data and scripts for Nature manuscript "The structure and physical properties of a packaged bacteriophage particle" that reports the all-atom structure of a complete HK97 virion, including its entire 39,732 base pair genome, obtained through multi-resolution simulations.
keywords:
Virus capsid; Bacteriophage packaging; Multiresolution simulations; all-atom MD simulation
published: 2024-01-31
Wang, Xiudan; Dietrich, Christopher; Zhang, Yalin (2024): Datasets for Phylogeny and historical biogeography of leafhopper subfamily Coelidiinae (Hemiptera: Cicadellidae) based on morphological and molecular data . University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-5847605_V1
The included files were used to reconstruct the phylogeny of Coelidiinae using combined morphological and molecular data, estimate divergence times and reconstruct ancestral biogeographic areas as described in the manuscript submitted for publication. The file “Coelidiinae_dna_morph_combined.nex” is a text file in standard NEXUS format used by various phylogenetic analysis programs. This file includes the aligned and concatenated nucleotide sequences or five gene regions (mitochondrial COI and 16S, and nuclear 28S D-2, histone H3, histone H2A and wingless) indicated by standard “ACGT” nucleotide symbols with missing data indicated by “?”, and morphological character data as defined in Table S3 used in the analyses. The data partitions are indicated toward the end of the file by ranges of numbers (“charset Subset 1 – 4” for the DNA data and “charset morph” for the morphological characters) followed by commands for the phylogenetic analysis program MrBayes that specify the model settings for each data partition. Detailed data on species included (as rows) in the dataset, including collection localities and GenBank accession numbers are provided in the Table_S1_Specimen_information.csv file. The file "TablesS2-S4.pdf" lists the primers used for polymerase chain reaction amplification, the list of morphological character definitions, and the morphological character matrix. The file “RASP_Distribution.csv” contains a list of the species included in the phylogenetic dataset (first column) and a code (second column) indicating their distributions as follows: (A) Oriental, (B) Palaearctic, (C) Australian, (D) Afrotropical, (E) Neotropical, and (F) Nearctic. More than one letter indicates that the species occurs in more than one region. The file "infile_for_BEAST.txt" is the input file in XML format used for the molecular divergence time analysis using the program BEAST (Bayesian Evolutionary Analysis by Sampling Trees) as described in the Methods section of the manuscript. This file includes comments that document the steps of the analysis.
keywords:
leafhopper; phylogeny; DNA sequence; insect; timetree; biogeography
published: 2020-12-29
Viana, Jéssica; Turner, Benjamin; Dalling, James (2020): Fern functional traits. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-8724462_V1
Three datasets: species_abundance_data, species_traits, and environmental_data. The three datasets were collected in the Fortuna Forest Reserve (8°45′ N, 82°15′ W) and Palo Seco Protected Forest (8°45′ N, 82°13′ W) located in western Panama. The two reserves support humid to super-humid rainforests, according to Holdridge (1947). The species_abundance_data and species_traits datasets were collected across 15 subplots of 25 m2 in 12 one-hectare permanent plots distributed across the two reserves. The subplots were spaced 20 m apart along three 5 m wide transects, each 30 m apart. Please read Prada et al. (2017) for details on the environmental characteristics of the study area. Prada CM, Morris A, Andersen KM, et al (2017) Soils and rainfall drive landscape-scale changes in the diversity and functional composition of tree communities in a premontane tropical forest. J Veg Sci 28:859–870. https://doi.org/10.1111/jvs.12540
keywords:
functional traits; plants; ferns; environmental data; Fortuna; species data; community ecology
published: 2019-09-17
Mishra, Shubhanshu (2019): Trained models for multi-task multi-dataset learning for text classification in tweets. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-1917934_V1
Trained models for multi-task multi-dataset learning for text classification in tweets. Classification tasks include sentiment prediction, abusive content, sarcasm, and veridictality. Models were trained using: <a href="https://github.com/socialmediaie/SocialMediaIE/blob/master/SocialMediaIE/scripts/multitask_multidataset_classification.py">https://github.com/socialmediaie/SocialMediaIE/blob/master/SocialMediaIE/scripts/multitask_multidataset_classification.py</a> See <a href="https://github.com/socialmediaie/SocialMediaIE">https://github.com/socialmediaie/SocialMediaIE</a> and <a href="https://socialmediaie.github.io">https://socialmediaie.github.io</a> for details. If you are using this data, please also cite the related article: Shubhanshu Mishra. 2019. Multi-dataset-multi-task Neural Sequence Tagging for Information Extraction from Tweets. In Proceedings of the 30th ACM Conference on Hypertext and Social Media (HT '19). ACM, New York, NY, USA, 283-284. DOI: https://doi.org/10.1145/3342220.3344929
keywords:
twitter; deep learning; machine learning; trained models; multi-task learning; multi-dataset learning; sentiment; sarcasm; abusive content;
published: 2021-06-08
Todd, Jones; Michael, Ward (2021): Jones and Ward JAE-2020-0031.R1. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-6218430_V1
Dataset associated with Jones and Ward JAE-2020-0031.R1 submission: Pre-to post-fledging carryover effects and the adaptive significance of variation in wing development for juvenile songbirds. Excel CSV files with data used in analyses and file with descriptions of each column. The flight ability variable in this dataset was derived from fledgling drop tests, examples of which can be found in the related dataset: Jones, Todd M.; Benson, Thomas J.; Ward, Michael P. (2019): Flight Ability of Juvenile Songbirds at Fledgling: Examples of Fledgling Drop Tests. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-2044905_V1.
keywords:
fledgling; wing development; life history; adaptive significance; post-fledging; songbirds
published: 2021-11-23
Riemer, Nicole; Yao, Yu; Dawson, Matthew; Dabdub, Donald (2021): Data for: Evaluating the impacts of cloud processing on resuspended aerosol particles after cloud evaporation using a particle-resolved model. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-8367769_V2
This dataset contains simulation results from PartMC-MOSAIC-CAPRAM used in the article ”Eval- uating the impacts of cloud processing on resuspended aerosol particles after cloud evaporation using a particle-resolved model”. In this V2, there are eight folders: one for urban plume simulation to provide the initial particle population for cloud processing, the other four folders are for the four cloud cycles simulated and the last two are for the coagulation cases. Within the urban plume simulation, there are 25 NetCDF files hourly output from PartMC-MOSAIC simulations containing the gas and particle information. Within the four cloud cycle folders, there are 25 subdirectories that contain the cloud processing results for aerosol population from urban plume environment. For each subdirectory, there are 31 NetCDF files out- put every minute from PartMC-MOSAIC-CAPRAM simulations containing aerosol and gas information after aqueous chemistry. Another two folders are for the cases considering Brownian coagulation and sedimentation coalescence. Each contained 93 NetCDF files, produced from repeating the 30-minutes simulations for three times to consider the coagulation randomness. The low polluted case folder includes the simulated cloud processing results for 25 urban plume cases with less aerosol number concentration. This dataset was used to investigate the effects of cloud processing on aerosol mixing state and CCN properties.
keywords:
cloud process; coagulation; aqueous chemistry; aerosol mixing state; CCN
published: 2022-10-22
Madhavan, Vidya; Aishwarya, Anuva (2022): Data for Evidence for a robust sign-changing s-wave order parameter in monolayer films of superconducting Fe(Se,Te)/Bi2Te3. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-6972172_V1
This dataset consists of all the files that are part of the manuscript titled "Evidence for a robust sign-changing s-wave order parameter in monolayer films of superconducting Fe(Se,Te)/Bi2Te3". For detailed information on the individual files refer to the readme file.
keywords:
thin film; mbe; topology; superconductivity; topological insulator; stm; spectroscopy; qpi
published: 2023-05-08
Stickley, Samuel; Fraterrigo, Jennifer (2023): Microclimate Species Distribution Models for Plethodontid Salamanders in Great Smoky Mountains National Park. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-1549958_V1
This dataset includes microclimate species distribution models at a ~3 m2 spatial resolution and free-air temperature species distribution models at ~0.85 km2 spatial resolution for three plethodontid salamander species (Demognathus wrighti, Desmognathus ocoee, and Plethodon jordani) across Great Smoky Mountains National Park. We also include heatmaps representing the differences between microclimate and free-air species distribution models and polygon layers representing the fragmented habitat for each species' predicted range. All datasets include predictions for 2010, 2030, and 2050.
keywords:
Ecological niche modeling, microclimate, species distribution model, spatial resolution, range loss, suitable habitat, plethodontid salamanders, montane ecosystems
published: 2019-09-17
Mishra, Shubhanshu (2019): Trained models for multi-task multi-dataset learning for sequence prediction in tweets. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-0934773_V1
Trained models for multi-task multi-dataset learning for sequence tagging in tweets. Sequence tagging tasks include POS, NER, Chunking, and SuperSenseTagging. Models were trained using: <a href="https://github.com/socialmediaie/SocialMediaIE/blob/master/SocialMediaIE/scripts/multitask_multidataset_experiment.py">https://github.com/socialmediaie/SocialMediaIE/blob/master/SocialMediaIE/scripts/multitask_multidataset_experiment.py</a> See <a href="https://github.com/socialmediaie/SocialMediaIE">https://github.com/socialmediaie/SocialMediaIE</a> and <a href="https://socialmediaie.github.io">https://socialmediaie.github.io</a> for details. If you are using this data, please also cite the related article: Shubhanshu Mishra. 2019. Multi-dataset-multi-task Neural Sequence Tagging for Information Extraction from Tweets. In Proceedings of the 30th ACM Conference on Hypertext and Social Media (HT '19). ACM, New York, NY, USA, 283-284. DOI: https://doi.org/10.1145/3342220.3344929
keywords:
twitter; deep learning; machine learning; trained models; multi-task learning; multi-dataset learning;
published: 2024-02-26
Harsh, Vipul; Zhou, Wenxuan; Ashok, Sachin; Mysore, Radhika Niranjan; Godfrey, Brighten; Banerjee, Sujata (2024): Murphy traces. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-6641912_V1
Traces created using DeathStarBench (https://github.com/delimitrou/DeathStarBench) benchmark of microservice applications with injected failures on containers. Failures consist of disk/CPU/memory failures.
keywords:
Murphy;Performance Diagnosis;Microservice;Failures
published: 2020-12-02
Yang, Pan; Cai, Ximing; Khanna, Madhu (2020): Farmers’ Perceptions of Marginal Land for Biofuel Crops . University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-3074705_V1
The dataset includes the survey results about farmers’ perceptions of marginal land availability and the likelihood of a land pixel being marginal based on a machine learning model trained from the survey. Two spreadsheet files are the farmer and farm characteristics (marginal_land_survey_data_shared.xlsx), and the existing land use of marginal lands (land_use_info_sharing.xlsx). <b>Note:</b> the blank cells in these two spreadsheets mean missing values in the survey response. The GeoTiff file includes two bands, one the marginal land likelihood in the Midwestern states (0-1), the other the dominant reason of land marginality (0-5; 0 for farm size, 1 for growing season precipitation, 2 for root zone soil water capacity, 3 for average slope, 4 for growing season mean temperature, and 5 for growing season diurnal range of temperature). To read the data, please use a GIS software such as ArcGIS or QGIS.
keywords:
marginal land; survey
published: 2021-05-14
Abbamonte, Peter (2021): Data for Anomalous density fluctuations in a strange metal. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-2888536_V1
This is the complete dataset for the "Anomalous density fluctuations in a strange metal" Proceedings of the National Academy of Sciences publication (https://doi.org/10.1073/pnas.1721495115). This is an integration of the Zenodo dataset which includes raw M-EELS data. <b>METHODOLOGICAL INFORMATION</b> 1. Description of methods used for collection/generation of data: Data have been collected with a M-EELS instrument and according to the data acquisition protocol described in the original PNAS publication and in SciPost Phys. 3, 026 (2017) (doi: 10.21468/SciPostPhys.3.4.026) 2. Methods for processing the data: Raw data were collected with a channeltron-based M-EELS apparatus described in the reference PNAS publication and analyzed according to the procedure outlined both in the PNAS paper and in SciPost Phys. 3, 026 (2017) (doi: 10.21468/SciPostPhys.3.4.026). The raw M-EELS spectra at each momentum have been subject to minor data processing involving: (a) averaging of different acquisitions at the same conditions, (b) energy binning, (c) division of an effective Coulomb matrix element (which yields a structure factor S(q,\omega)), (d) antisymmetrization (which yields the imaginary chi) All these procedures are described in the PNAS paper. 3. Instrument- or software-specific information needed to interpret the data: These data are simple .txt or .dat files which can be read with any standard data analysis software, notably Python notebooks, MatLab, Origin, IgorPro, and others. We do not include scripts in order to provide maximum flexibility. 4. Relationship between files, if important: We divided in different folders raw data, structure factors and imaginary chi. <b>DATA-SPECIFIC INFORMATION</b> There are 8 folders within the Data_public_deposition_v1.zip. Each folder contain data needed to create the corresponding figure in the publication. <b>1. Fig1:</b> This folder contains 21 DAT files needed to plot the theory data in panels C and D, following this naming conventions: [chiA]or[chiB]or[Pi]_q_number.dat With chiA is the imaginary RPA charge susceptibility with a Coulomb interaction of electronically weakly coupled layers chiB is the imaginary RPA charge susceptibility with the usual 4\pi e^2/q^2 Coulomb interaction. Pi is the imaginary Lindhard polarizability. q is momentum in reciprocal lattice units Number is the numerical momentum value in reciprocal lattice units <b>2. Fig2:</b> Files needed to plot Fig. 2 of the PNAS paper. Contains 3 folders as listed below. The files in this folder are named following this convention: Bi2212_295K_(1,-1)_50eV_161107_q_number_2.16_avg.dat, 295K is the sample temperature (1,-1) is the momentum direction in reciprocal lattice units 50 eV is the incident e beam energy 161107 is the start date of the experiment in yymmdd format Q is the momentum Number is the momentum in reciprocal lattice units 2.16 is the energy range covered by the data in eV Avg identifies averaged data ImChi: is the imaginary susceptibility obtained by antisymmetryzing the structure factor Raw_avg_data: raw averaged M-EELS spectra Sqw: Structure factors derived from the M-EELS spectra <b>3. Fig3:</b> Files needed to plot Fig. 3 of the PNAS paper. OP/ OD prefix identifies optimally doped or overdosed sample data, respectively. ImChi: is the imaginary susceptibility obtained by antisymmetryzing the structure factor Raw_avg_data: raw averaged M-EELS spectra Sqw: Structure factors derived from the M-EELS spectra <b>4. Fig4:</b> Files needed to plot Fig. 4 of the PNAS paper. The _fit_parameters.dat file contains the fit parameters extracted according to the fit procedure described in the manuscript and at all momenta. ImChi: is the imaginary susceptibility obtained by antisymmetryzing the structure factor Raw_avg_data: raw averaged M-EELS spectra Sqw: Structure factors derived from the M-EELS spectra <b>5. FigS1:</b> Files needed to plot Fig. S1 of the PNAS paper. There are 5 files in this folder. DAT files are M-EELS data following the prior naming convention, while the two .txt files are digitized data from N. Nücker, U. Eckern, J. Fink, and P. Müller, Long-Wavelength Collective Excitations of Charge Carriers in High-Tc Superconductors, Phys. Rev. B 44, 7155(R) (1991), and K. H. G. Schulte, The interplay of Spectroscopy and Correlated Materials, Ph.D. thesis, University of Groningen (2002). <b>6. FigS2:</b> Files needed to plot Fig. S2 of the PNAS paper. ImChi: is the imaginary susceptibility obtained by antisymmetryzing the structure factor Raw_avg_data: raw averaged M-EELS spectra Sqw: Structure factors derived from the M-EELS spectra <b>7. FigS3:</b> Files needed to plot Fig. S3 of the PNAS paper. There are 2 files in this folder: 20K_phi_0_q_0.dat: is a M-EELS raw intensity at zero momentum transfer on Bi2212 at 20 K 295K_phi_0_q_0.dat: is a M-EELS raw intensity at zero momentum transfer on Bi2212 at 295 K <b>8. FigS4:</b> Files needed to plot Fig. S4 of the PNAS paper. The _fit_parameters.dat file contains the fit parameters extracted according to the fit procedure described in the manuscript and at all momenta. ImChi: is the imaginary susceptibility obtained by antisymmetryzing the structure factor Raw_avg_data: raw averaged M-EELS spectra Sqw: Structure factors derived from the M-EELS spectra
keywords:
Momentum resolved electron energy loss spectroscopy (M-EELS); cuprates; plasmons; strange metal
published: 2022-09-29
Merrill, Loren; Jones, Todd; Brawn, Jeffrey; Ward, Michael (2022): Merrill et al. ECE-2021-05-00793.R1. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-8719858_V1
Dataset associated with Merrill et al. ECE-2021-05-00793.R1 submission: Early life patterns of growth are linked to levels of phenotypic trait covariance and post-fledging mortality across avian species. Excel CSV files with all of the data used in analyses and file with descriptions of each column.
keywords:
canalization; developmental flexibility; early-life stress; nest predation; phenotypic correlation; trait covariance
published: 2022-10-14
Zhou, Shan; Li, Jiahui; Lu, Jun; Liu, Haihua; Kim, Ji-Young; Kim, Ahyoung; Yao, Lehan; Liu, Chang; Qian, Chang; Hood, Zachary D. ; Lin, Xiaoying; Chen, Wenxiang; Gage, Thomas E. ; Arslan, Ilke; Travesset, Alex; Sun, Kai; Kotov, Nicholas A.; Chen, Qian (2022): Chiral Assemblies of Pinwheel Superlattices on Substrates. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-0873473_V1
This dataset is the raw data including SEM, TEM, PINEM images and FDTD simulation as well as pairwise interaction calculation results.
published: 2022-11-07
Jones, Todd; Di Giovanni, Alexander; Hauber, Mark; Ward, Michael (2022): Data for Jones et al. ECY22-0118.R3. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-7460768_V1
Dataset associated with Jones et al. ECY22-0118.R3 submission: Ontogenetic effects of brood parasitism by the Brown-headed Cowbird on host offspring. Excel CSV files with all of the data used in analyses and file with descriptions of each column.
keywords:
brood parasitism; cowbirds; host-parasite systems; ontogeny; post-fledging; songbirds
published: 2022-12-31
Maffeo, Christopher; Wilson, Jim; Quednau, Lauren; Aksimentiev, Aleksei (2022): Simulation Trajectories for "DNA double helix, a tiny electromotor". University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-6770800_V1
Trajectory data for Nature Nanotechnology manuscript "DNA double helix, a tiny electromotor" that demonstrates how an electric field applied along the helical axis of a DNA or RNA molecule will generate an electroosmotic flow that causes the duplex to spin about that axis, much like a turbine.
keywords:
All-atom MD simulation; DNA; nanotechnology; motors and rotors
published: 2022-08-25
Souza-Cole, Ian; Ward, Michael; Rebecca, Mau; Jeffrey, Foster; Benson, Thomas (2022): Eastern Whip-poor-will abundance declines with urban land cover and increases with moth abundance in the American Midwest. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-7745473_V1
Data in this publication were used to analyze the factors that influence the abundance of eastern whip-poor-wills in the Midwest and to describe the diet of this species. These data were collected in Illinois in 2019 and 2020. Procedures were approved by the Illinois Institutional Animal Care and Use Committee (IACUC), protocol no. 19006
keywords:
eastern whip-poor-will; Antrostomus vociferus; abundance; moths; nightjars; Lepidoptera; metabarcoding
published: 2020-11-06
Sashittal, Palash; Zhang, Chuanyi; El-Kebir, Mohammed (2020): Simulation Data for JUMPER: Discontinuous Transcript Assembly in SARS-CoV-2. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-6667667_V1
This data contains bam files and transcripts in the simulated instances generated for the paper 'JUMPER: Discontinuous Transcript Assembly in SARS-CoV-2' submitted for RECOMB 2021. The folder 'bam' contained the simulated bam files aligned using STAR wile the reads were generated using the method polyester Note: in the readme file, close to the end of the document, please ignore this sentence: 'Those files can be opened by using [name of software].'
keywords:
transcript assembly; SARS-CoV-2; discontinuous transcription; coronaviruses
published: 2022-08-23
Seyfried, Georgia; Corrales, Adriana; Kent, Angela; Dalling, James; Yang, Wendy (2022): Soil data for Watershed-scale variation in potential fungal community contributions to ectomycorrhizal biogeochemical syndromes. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-3532603_V1
This dataset contains soil chemical properties used to variation in soil fungal communities beneath Oreomunnea mexicana trees in the manuscript "Watershed-scale variation in potential fungal community contributions to ectomycorrhizal biogeochemical syndromes"
keywords:
Acid-base chemistry; Ectomycorrhizal fungi; Exploration type; Nitrogen cycling; Nitrogen isotopes; Plant-soil (below-ground) interactions; Saprotrophic fungi; Tropical forest
published: 2022-11-07
Sweedler, Jonathan; Castro, Daniel (2022): Single-cell and Subcellular Analysis using Ultrahigh Resolution 21 T MALDI FTICR Mass Spectrometry. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-4873339_V1
The dataset contains the data and code for Single-cell and Subcellular Analysis of freshly isolated cultured, uncultured P1 cells and uncultured Old cells. The .csv file named 'MagLab20220721' contains the sample and intensity information with the columns referring to the m/z values and the rows being the samples. The 'MagLabNameINdex.csv' file contains all the index information. The file named '20220721_MagLab.spydata' contains the loaded data of both the two previous files in Spyder. The .mat file contains the aligned data for the three groups.
keywords:
Single-cell; Subcellular; Mass Spectrometry; MALDI; Lipidomics; FTICR; 21 T
published: 2023-03-13
Yang, Joyce; Zhao , Lei; Oleson, Keith (2023): Historical and future CESM climate simulations from: Large humidity effects on urban heat exposure and cooling challenges under climate change. University of Illinois at Urbana-Champaign. https://doi.org/10.13012/B2IDB-9627482_V1
This dataset contains the historical and future (SSP3 and RCP7.0) CESM climate simulations used in the article "Large humidity effects on urban heat exposure and cooling challenges under climate change" (upcoming). Further details about these simulations can be found in the article. This dataset documents the monthly mean projections of air temperature, wet-bulb temperature, precipitation, relative humidity, and numerous other climatic variables for 2000-2009 (for the historical run) and for 2015-2100 (for the future projection under SSP3-RCP7). This dataset may be useful for urban planners, climate scientists, and decision-makers interested in changes in urban and rural climate under climate change.
keywords:
urban climate; climate change; heat stress; urban heat