Dataset Search Results

Dataset with numerical routines and laboratory testing data associated with the manuscript: Bondarenko, N., Podladchikov, Y., Williams‐Stroud, S., & Makhnenko, R. (2025). Stratigraphy‐induced localization of microseismicity during CO2 injection in Illinois Basin. Journal of Geophysical Research: Solid Earth, 130, e2024JB029526. https://doi.org/10.1029/2024JB029526

Over the past 15 years, soybean seed yield response to season-long elevated O3 concentrations [O3] and to year-to-year weather conditions was studied using free-air O3 concentration enrichment (O3-FACE) in the field at the SoyFACE facility in Central Illinois. Elevated [O3] significantly reduced seed yield across cultivars and years. However, our results quantitatively demonstrate that weather conditions, including soil water availability and air temperature, did not alter yield sensitivity to elevated [O3] in soybean.

BEPAM, Biofuel and Environmental Policy Analysis Model, models the agricultural sector and determines economically optimal land-use and feedstock mix at the US scale by maximizing the sum of agricultural sector consumers’ and producers’ surplus subject to various resource balances, land availability, and technological constraints under a range of biomass prices, from zero to $140 Mg-1 over the 2016-2030 period. Here BEPAM is used to model SAF production using energy crops and crop residues. BEPAM uses the GAMS format and uses yield and GHG balance projections from the biogeochemical model, DayCent.

Dataset of the standing dead trees at Trelease Woods in 2022. Dataset contains volume, biomass, decay class, and GPS coordinates for each standing dead tree.

Downed woody debris census data for Trelease Woods collected in the summer of 2022. Dataset contains volume, biomass, decay class, and GPS coordinates for each downed woody debris piece.

Soil data for ten soil cores collected at Trelease Woods in 2022. Soil samples were analyzed with an elemental analyzer via combustion to obtain total carbon (C) and nitrogen. A subset of these samples were analyzed using the Walkley-Black method to obtain organic C. A calibration curve relating organic C and total C was created using these data.

This is the core data for RELIX, a dataset of vascular plant species presence for 353 prairie remnants in the Midwestern United States and associated dataset of prairie remnant metadata. The primary data file contains a list of the vascular plant species observed in the prairie remnants, as well as a metadata table with more information about the prairie remnant in question and the species list itself. The data was compiled from a variety of written sources, private and published, chronicling observations made between the mid-twentieth century and 2021. It also contains a supplementary data table of vascular plant species observed in at least 8 of the prairie remnants in RELIX, as well as a list of acknowledgements for the associated manuscript.

This dataset contains all the raw and processed data used to generate the figures presented in the main text and the supplementary information of the paper "Operation of a high frequency, phase slip qubit." It also includes code for data analysis and code for generating the figures.

This is a set of topographies to study the magnetic field response of RbV3Sb5 (related to Fig.4 of https://www.nature.com/articles/s41586-024-07519-5)

This study acquired publicly available Shell annual reports. Reports were selected for the years since the UN investigation in 2011, resulting in documents from 2012 to 2023.

These data records weekly aphid and monarch butterfly (Danaus plexippus) neonate counts on individual milkweed plants in multiple raised garden beds in Chicago during the summers of 2023 and 2024. Relationships between aphid infestation and monarch neonates can be investigated along with weekly trends of monarch oviposition and aphid abundances. All gardens included in this study were on the University of Illinois Chicago campus, and within 100 meters of proximity. Data are provided on three milkweed species in 2023, and one milkweed species in 2024.

Historical census data collected at Trelease Woods from 1986 to 2004 with information on tree species, diameter at breast height (DBH), and plot location.

Census data collected at Trelease Woods in 1936 with information on tree species, stem count, diameter at breast height (DBH), and basal area. The plot boundaries from the 1936 census were georeferenced to subset 2018 census data for a direct comparison between the two census years.

A mechanistic functional structural plant model. The .gsz file includes a parameterised maize and soybean to be used in GRoIMP software https://grogra.de/. The current model is parameterised to maize cultivar DKC63-21RIB and soybean cultivar AG36X6 for the 2019 growing season in Champaign, IL USA.

This dataset contains all raw and processed data used to generate the figures in the main text and supplementary material of the paper "High dynamic-range quantum sensing of magnons and their dynamics using a superconducting qubit." The data can be used to reproduce the plots and validate the analysis. Accompanying Jupyter notebooks provide step-by-step analysis pipelines for figure generation. The dataset also includes drawings for the mechanical samples used to perform the experiment. In addition, the dataset provides ANSYS HFSS electromagnetic simulation files used to design and analyze the resonator structures and estimate field distributions.

Environmental DNA metabarcoding data for fish communities at 50 sites in the Tennessee River watershed of northern Alabama, United States collected in summer 2018 used in the calculation of an Index of Biotic Integrity for biological monitoring

The zip file contains the benchmark data used for the TIPP3 simulation study. See the README file for more information.

The included files are the alignments of DNA or amino acid sequences used for phylogenetic analyses of Auchenorrhyncha (Insecta: Hemiptera) in the manuscript by Bin et al. submitted to the journal “Systematic Entomology.” The files are plain text in either FASTA (.fa or .fas suffix) or PHYLIP (.phy suffix) format. Matrix0 is the set of all loci after multiple sequence alignment and trimming (hereafter called). Matrix1 consists of loci having 75% average bootstrap support and 80% taxon completeness (hereafter called Matrix1). Matrix2 consists of loci having 75% average bootstrap support and 95% completeness. Matrix2_nt12 is the same as Matrix2 but with third codon positions excluded. More details on how the datasets were compiled is provided in the Methods section of the manuscript file, also included as a PDF. Supplemental figures for the submitted manuscript are also provided as a PDF for additional information.

References - Jeong, Gangwon, Umberto Villa, and Mark A. Anastasio. "Revisiting the joint estimation of initial pressure and speed-of-sound distributions in photoacoustic computed tomography with consideration of canonical object constraints." Photoacoustics (2025): 100700. - Park, Seonyeong, et al. "Stochastic three-dimensional numerical phantoms to enable computational studies in quantitative optoacoustic computed tomography of breast cancer." Journal of biomedical optics 28.6 (2023): 066002-066002. Overview - This dataset includes 80 two-dimensional slices extracted from 3D numerical breast phantoms (NBPs) for photoacoustic computed tomography (PACT) studies. The anatomical structures of these NBPs were obtained using tools from the Virtual Imaging Clinical Trial for Regulatory Evaluation (VICTRE) project. The methods used to modify and extend the VICTRE NBPs for use in PACT studies are described in the publication cited above. - The NBPs in this dataset represent the following four ACR BI-RADS breast composition categories: > Type A - The breast is almost entirely fatty > Type B - There are scattered areas of fibroglandular density in the breast > Type C - The breast is heterogeneously dense > Type D - The breast is extremely dense - Each 2D slice is taken from a different 3D NBP, ensuring that no more than one slice comes from any single phantom. File Name Format - Each data file is stored as a .mat file. The filenames follow this format: {type}{subject_id}.mat where{type} indicates the breast type (A, B, C, or D), and {subject_id} is a unique identifier assigned to each sample. For example, in the filename D510022534.mat, "D" represents the breast type, and "510022534" is the sample ID. File Contents - Each file contains the following variables: > "type": Breast type > "p0": Initial pressure distribution [Pa] > "sos": Speed-of-sound map [mm/μs] > "att": Acoustic attenuation (power-law prefactor) map [dB/ MHzʸ mm] > "y": power-law exponent > "pressure_lossless": Simulated noiseless pressure data obtained by numerically solving the first-order acoustic wave equation using the k-space pseudospectral method, under the assumption of a lossless medium (corresponding to Studies I, II, and III). > "pressure_lossy": Simulated noiseless pressure data obtained by numerically solving the first-order acoustic wave equation using the k-space pseudospectral method, incorporating a power-law acoustic absorption model to account for medium losses (corresponding to Study IV). * The pressure data were simulated using a ring-array transducer that consists of 512 receiving elements uniformly distributed along a ring with a radius of 72 mm. * Note: These pressure data are noiseless simulations. In Studies II–IV of the referenced paper, additive Gaussian i.i.d. noise were added to the measurement data. Users may add similar noise to the provided data as needed for their own studies. - In Study I, all spatial maps (e.g., sos) have dimensions of 512 × 512 pixels, with a pixel size of 0.32 mm × 0.32 mm. - In Study II and Study III, all spatial maps (sos) have dimensions of 1024 × 1024 pixels, with a pixel size of 0.16 mm × 0.16 mm. - In Study IV, both the sos and att maps have dimensions of 1024 × 1024 pixels, with a pixel size of 0.16 mm × 0.16 mm.

This is an Excel file containing data about the physical environments of four Brazilian schools and the average daily minutes/day of physical activity and sedentary behavior exhibited by schoolchildren during school hours. The Following Key describes the basic variables: Subject IDs and Characteristics Subject_ID: ID of Subject total_days: Total number of days subject participated in experiment Gender : Gender of subject Age: Age of subject School IDs and Characteristics ID_School = ID of School school1 = 1 if ID_School = 1, else = 0 school2 = 1 if ID_School = 2, else = 0 school3 = 1 if ID_School = 3, else = 0 school4 = 1 if ID_School = 4, else = 0 TotalSiteArea: Total Site Area on School Campus PatioArea: Area of Patio(s) CourtyardArea: Area of Courtyard(s) TotalOpenArea: Total Area of Open Spaces on Campus Class: Number of Sections in the School Population: Total Number of Students Enrolled in the School

Data and code supporting the paper titled "Leveraging electric vehicles as a resiliency solution for residential backup power during outages" by Shanshan Liu, Alex Vlachokostas, and Eleftheria Kontou. The data and the code enable spatiotemporal analytics and assessment of electric vehicle charging demand, remaining driving range, residential energy use, and vehicle-to-home (V2H) energy system resilience metrics.

Data at the lake summary and individual crayfish level that supports the manuscript Sawyer, E.K., Kreps, T. A., Lodge, D. M. and E.R. Larson. “Long-term declines in body size of the invasive rusty crayfish (Faxonius rusticus) in temperate lakes." Includes size measurements of 69,303 individual rusty crayfish (Faxonius rusticus) for 17 lakes of Vilas County, Wisconsin, United States collected between 1980 and 2020.

Simulation data used to generate plots in the associated paper ("Strain rate controls alignment in growing bacterial monolayers").

Dataset used for the paper entitled "Morphological differences between wild and game-farm Mallards in North America". Large-scale releases of domesticated, game-farm Mallards to supplement wild populations have resulted in wide-spread introgressive hybridization that changed the genetic constitution of wild populations in eastern North America. The resulting gene flow is well-documented between game-farm and wild Mallards, but the mechanistic consequences from such interactions remain unknown in North America. We provide the first study to characterize and investigate potential differences in morphology between genetically known, wild and game-farm Mallards in North America. We used nine morphological measurements to discriminate between wild and game-farm Mallards with 96% accuracy. Compared to their wild counterparts, game-farm Mallards had longer bodies and tarsi, shorter heads and wings, and shorter, wider, and taller bills. The nail on the end of the bill of game-farm Mallards was longer, and game-farm Mallard bills had a greater lamellae:bill length ratio than wild Mallards. Differences in body morphologies between wild and game-farm Mallards are consistent with an artificial, terrestrial life whereby game-farm Mallards are fed pelleted foods resulting in artificial selection for a more “goose-like” bill. We posit that 1) game-farm Mallards have diverged from their wild ancestral traits of flying and filter feeding towards becoming optimized to run and peck for food; 2) game-farm morphological traits optimized over the last 400 years in domestic environments are likely to be maladaptive in the wild; and 3) the introgression of such traits into wild populations is likely to reduce fitness. Understanding effects of game-farm Mallard introgression requires analysis of various game-farm × wild hybrid generations to determine how domestically-derived traits persist or diminish with each generation.

Raw data associated with PMID: 38925247